From 537f81d27680988ccff45b11f25bc0bef963a422 Mon Sep 17 00:00:00 2001 From: bbimber Date: Mon, 8 Apr 2024 14:07:54 -0700 Subject: [PATCH] Switch from ETLHelper to DataIntegrationHelper --- .../src/org/labkey/test/tests/pmr/PMRTest.java | 14 +++----------- 1 file changed, 3 insertions(+), 11 deletions(-) diff --git a/PMR/test/src/org/labkey/test/tests/pmr/PMRTest.java b/PMR/test/src/org/labkey/test/tests/pmr/PMRTest.java index 6dd2d5746..650b7ffd8 100644 --- a/PMR/test/src/org/labkey/test/tests/pmr/PMRTest.java +++ b/PMR/test/src/org/labkey/test/tests/pmr/PMRTest.java @@ -17,38 +17,30 @@ package org.labkey.test.tests.pmr; import au.com.bytecode.opencsv.CSVReader; -import org.apache.hc.client5.http.classic.methods.HttpUriRequest; import org.junit.Assert; import org.junit.Before; import org.junit.BeforeClass; import org.junit.Test; import org.junit.experimental.categories.Category; -import org.labkey.remoteapi.Command; -import org.labkey.remoteapi.CommandResponse; -import org.labkey.remoteapi.PostCommand; import org.labkey.remoteapi.query.SelectRowsCommand; import org.labkey.remoteapi.query.TruncateTableCommand; import org.labkey.serverapi.reader.Readers; import org.labkey.test.BaseWebDriverTest; import org.labkey.test.Locator; -import org.labkey.test.Locators; import org.labkey.test.ModulePropertyValue; import org.labkey.test.TestFileUtils; import org.labkey.test.TestTimeoutException; import org.labkey.test.WebTestHelper; import org.labkey.test.categories.External; import org.labkey.test.categories.LabModule; -import org.labkey.test.tests.di.ETLHelper; import org.labkey.test.util.Ext4Helper; -import org.labkey.test.util.PipelineStatusTable; import org.labkey.test.util.RReportHelper; import org.labkey.test.util.RemoteConnectionHelper; import org.labkey.test.util.SqlserverOnlyTest; +import org.labkey.test.util.di.DataIntegrationHelper; import org.labkey.test.util.ehr.EHRClientAPIHelper; -import org.labkey.test.util.ehr.EHRTestHelper; import java.io.File; -import java.net.URI; import java.util.Arrays; import java.util.Collections; import java.util.Date; @@ -60,7 +52,7 @@ @Category({External.class, LabModule.class}) public class PMRTest extends BaseWebDriverTest implements SqlserverOnlyTest { - private final ETLHelper _etlHelper = new ETLHelper(this, getProjectName()); + private final DataIntegrationHelper _etlHelper = new DataIntegrationHelper(getProjectName()); @Override protected void doCleanup(boolean afterTest) throws TestTimeoutException @@ -158,7 +150,7 @@ private void testKinshipEtl() throws Exception Assert.assertEquals("Incorrect number of kinship rows", 0, select1.execute(getApiHelper().getConnection(), getProjectName()).getRowCount().intValue()); // Kick off ETL to stage data. This should also kick off a separate pipeline job to import, using geneticscore-importGeneticsData.view - _etlHelper.runETL("{PMR}/KinshipDataStaging"); + _etlHelper.runTransform("{PMR}/KinshipDataStaging"); goToDataPipeline(); waitForPipelineJobsToComplete(4, "ETL Job: Import PRIMe-seq Kinship Data", false);