Code

Merge discvr-23.7 to discvr-23.11#144

Code

Merged

bbimber merged 34 commits intodiscvr-23.11bimberlabinternal/BimberLabKeyModules:discvr-23.11from 23.11_fb_mergebimberlabinternal/BimberLabKeyModules:23.11_fb_mergeCopy head branch name to clipboardDec 1, 2023

+927-376

Commits

Commits on Oct 27, 2023

• Use more accurate VCF category

  bbimber

  committed
  9027662

  Copy full SHA for 9027662

• Add additional help/tutorial videos

  bbimber

  committed
  0cb902e

  Copy full SHA for 0cb902e

• Update annotation categories for mGAP summary

  bbimber

  committed
  f1e5e71

  Copy full SHA for f1e5e71

• Hide link to video not yet created

  bbimber

  committed
  828a149

  Copy full SHA for 828a149

Commits on Oct 28, 2023

• Correct typo

  bbimber

  committed
  c15e695

  Copy full SHA for c15e695

Commits on Oct 30, 2023

• Dialog changes (#137)

  Show description for 4daac3c
  

  hextraza

  and

  Sebastian Benjamin

  authored
  4daac3c

  Copy full SHA for 4daac3c

• Disable variant search links for now

  bbimber

  committed
  37f0896

  Copy full SHA for 37f0896

Commits on Nov 1, 2023

• Update logic for MCC transfers (#138)

  bbimber

  authored
  d7f6807

  Copy full SHA for d7f6807

• Update information captured by mGAP users (#139)

  Show description for aca539b
  bbimber

  authored
  aca539b

  Copy full SHA for aca539b

• Debug MCC alias cross-folder issues

  bbimber

  committed
  47de29a

  Copy full SHA for 47de29a

Commits on Nov 2, 2023

• Improve test coverage for MCC alias cross-folder issues (#140)

  Show description for 7ff58ba
  bbimber

  authored
  7ff58ba

  Copy full SHA for 7ff58ba

• Add MCC Pedigree query

  bbimber

  committed
  2934cc9

  Copy full SHA for 2934cc9

Commits on Nov 3, 2023

• Improve mGAP video dialogs

  bbimber

  committed
  e50446a

  Copy full SHA for e50446a

Commits on Nov 5, 2023

• Drop SnpSift in favor of annotating dbNSFP using Funcotator

  bbimber

  committed
  c359723

  Copy full SHA for c359723

Commits on Nov 6, 2023

• Update logic to replace problem characters for Funcotator fields

  bbimber

  committed
  0c4f182

  Copy full SHA for 0c4f182

Commits on Nov 7, 2023

• Add another image to version control

  bbimber

  committed
  edd73df

  Copy full SHA for edd73df

Commits on Nov 8, 2023

• Fix handling of dbNSFP special characters

  bbimber

  committed
  20e101c

  Copy full SHA for 20e101c

Commits on Nov 9, 2023

• Delete funcotator index on failure

  bbimber

  committed
  b05683c

  Copy full SHA for b05683c

Commits on Nov 15, 2023

• Add birth to MCC pedigree table

  bbimber

  committed
  7e8612d

  Copy full SHA for 7e8612d

• Bugfix to automatic resource setting for JBrowseLucenePipelineJob

  bbimber

  committed
  1d816b7

  Copy full SHA for 1d816b7

• Add fields to MCC query

  bbimber

  committed
  a96f56d

  Copy full SHA for a96f56d

• Switch the mGAP download window to point to the separated symlinks, and also validate symlinks in mGapMaintenanceTask

  bbimber

  committed
  576d925

  Copy full SHA for 576d925

• Update mGAP Release download window

  bbimber

  committed
  785e9bb

  Copy full SHA for 785e9bb

Commits on Nov 16, 2023

• Update Annotation table metadata

  bbimber

  committed
  d8e9d82

  Copy full SHA for d8e9d82

• Correct SQL error

  bbimber

  committed
  79114f1

  Copy full SHA for 79114f1

Commits on Nov 23, 2023

• Add debugging information to MCC alias assignment

  bbimber

  committed
  da147c4

  Copy full SHA for da147c4

Commits on Nov 25, 2023

• If duplicates aliases are found in MccTest, leave UI on the query

  bbimber

  committed
  d15b6c5

  Copy full SHA for d15b6c5

• MccTest fix

  bbimber

  committed
  29b76b0

  Copy full SHA for 29b76b0

Commits on Nov 26, 2023

• Improve tolerance for bad double values in mGapReleaseGenerator

  bbimber

  committed
  ee877a5

  Copy full SHA for ee877a5

• Improve parsing of polyphen

  bbimber

  committed
  028bea9

  Copy full SHA for 028bea9

Commits on Nov 27, 2023

• Fix MccTest on case-sensitive DBs (#141)

  bbimber

  authored
  80889cf

  Copy full SHA for 80889cf

Commits on Nov 28, 2023

• Add columns to track lucene index in mGAP release (#143)

  Show description for 181588d
  bbimber

  authored
  181588d

  Copy full SHA for 181588d

Commits on Nov 30, 2023

• Add calculated_status_codes.tsv to PMR

  bbimber

  committed
  7e9a579

  Copy full SHA for 7e9a579

Commits on Dec 1, 2023

• Merge discvr-23.7 to discvr-23.11

  bbimber

  committed
  42b8a7c

  Copy full SHA for 42b8a7c