Skip to content
@beroukhim-lab

beroukhim-lab

Popular repositories Loading

  1. ascets ascets Public

    This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm-level copy-number variant calls and arm-level weighted aver…

    R 15 1

  2. BISCUT-py3 BISCUT-py3 Public

    Python 10 5

  3. GaTSV GaTSV Public

    R 3

  4. SVsig SVsig Public

    MATLAB 2 1

  5. GATK_CN_CWL GATK_CN_CWL Public

    Implementation of the GATK copy number pipeline in CWL (ported from WDL)

    Common Workflow Language 1

  6. oncoprint-template oncoprint-template Public

    Template Code for OncoPrint

    R

Repositories

Showing 10 of 16 repositories
  • hcmi_sv_consensus_public Public
    beroukhim-lab/hcmi_sv_consensus_public’s past year of commit activity
    Python 0 0 0 0 Updated Jan 30, 2025
  • hcmi_copy_number_consensus Public
    beroukhim-lab/hcmi_copy_number_consensus’s past year of commit activity
    Python 0 0 0 0 Updated Jan 30, 2025
  • GaTSV Public
    beroukhim-lab/GaTSV’s past year of commit activity
    R 3 GPL-2.0 0 0 0 Updated Jan 28, 2025
  • crispr_seq_deconvolution Public
    beroukhim-lab/crispr_seq_deconvolution’s past year of commit activity
    Python 0 0 0 0 Updated Dec 24, 2024
  • TangentXY Public

    An extension of the Tangent method that allows for improved normalization of the sex chromosomes.

    beroukhim-lab/TangentXY’s past year of commit activity
    R 0 0 0 0 Updated Oct 14, 2024
  • SVsig Public
    beroukhim-lab/SVsig’s past year of commit activity
    MATLAB 2 AGPL-3.0 1 0 0 Updated Jul 22, 2024
  • TangentXY_scripts Public
    beroukhim-lab/TangentXY_scripts’s past year of commit activity
    R 0 0 0 0 Updated Jul 15, 2024
  • gatk4-data-processing Public Forked from gatk-workflows/gatk4-data-processing

    Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

    beroukhim-lab/gatk4-data-processing’s past year of commit activity
    WDL 0 BSD-3-Clause 77 0 0 Updated Jun 7, 2024
  • BISCUT-py3 Public
    beroukhim-lab/BISCUT-py3’s past year of commit activity
    Python 10 5 3 1 Updated Apr 25, 2024
  • ancestry_manuscript_code Public
    beroukhim-lab/ancestry_manuscript_code’s past year of commit activity
    Jupyter Notebook 0 GPL-2.0 0 0 0 Updated Apr 25, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…