Fix linting issues

.github/workflows/api-ci.yml

@@ -57,6 +57,10 @@ jobs:
 
      runs-on: ubuntu-20.04
 
+     strategy:
+       matrix:
+         python-version: [3.9]
+
      services:
       postgres:
         image: postgres:12
@@ -70,7 +74,7 @@ jobs:
         options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
 
      steps:
-       - uses: actions/checkout@v2
+       - uses: actions/checkout@v4
          with:
            fetch-depth: 0
        - name: Set up Python ${{ matrix.python-version }}
@@ -103,6 +107,9 @@ jobs:
   build:
     # needs: PyTest
     runs-on: ubuntu-20.04
+    strategy:
+      matrix:
+        python-version: [3.9]
     name: Build
     steps:
       - uses: actions/checkout@v2

submit-api/src/submit_api/resources/user.py

@@ -52,8 +52,8 @@
         return created_user, HTTPStatus.CREATED
 
 
-@cors_preflight('GET, OPTIONS, PATCH, DELETE')
-@API.route('/<user_id>', methods=["PATCH", "GET", "OPTIONS", "DELETE"])
+@cors_preflight('GET, OPTIONS, PUT, DELETE')
+@API.route('/<user_id>', methods=["PUT", "GET", "OPTIONS", "DELETE"])
 class User(Resource):
     """Resource for managing a single user"""
 
@@ -68,7 +68,7 @@
     @staticmethod
     @cross_origin(origins=allowedorigins())
     @auth.require
-    def patch(user_id):
+    def put(user_id):
         """Update a user by id."""
         user_data = request.get_json()
         updated_user = UserService.update_user(user_id, user_data)

submit-api/tests/conftest.py

@@ -19,7 +19,7 @@
 from flask_migrate import Migrate, upgrade
 from sqlalchemy import event, text
 
-from api import create_app, setup_jwt_manager
+from submit_api import create_app, setup_jwt_manager
 from submit_api.auth import jwt as _jwt
 from submit_api.models import db as _db
 
@@ -136,20 +136,6 @@ def client_id():
     return f'client-{_id}'
 
 
-@pytest.fixture(scope='session', autouse=True)
-def auto(docker_services, app):
-    """Spin up a keycloak instance and initialize jwt."""
-    if app.config['USE_TEST_KEYCLOAK_DOCKER']:
-        docker_services.start('keycloak')
-        docker_services.wait_for_service('keycloak', 8081)
-
-    setup_jwt_manager(app, _jwt)
-
-    if app.config['USE_DOCKER_MOCK']:
-        docker_services.start('proxy')
-        time.sleep(10)
-
-
 @pytest.fixture(scope='session')
 def docker_compose_files(pytestconfig):
     """Get the docker-compose.yml absolute path."""