ligysis_config.txt

### LIGYSIS CONFIG FILE ###

[paths]

## BINARIES

stamp_bin = /cluster/gjb_lab/2394007/stamp_new/stamp.4.5/bin/linux/stamp
transform_bin = /cluster/gjb_lab/2394007/stamp_new/stamp.4.5/bin/linux/transform
clean_pdb_python_bin = /cluster/gjb_lab/2394007/miniconda/envs/arpeggio/bin/python
clean_pdb_bin = /cluster/gjb_lab/2394007/pandda_analysis/clean_pdb.py
arpeggio_python_bin = /cluster/gjb_lab/2394007/miniconda/envs/pdbe-arpeggio-env/bin/python
arpeggio_bin = /cluster/gjb_lab/2394007/miniconda/envs/pdbe-arpeggio-env/bin/pdbe-arpeggio

## DATABASES

ensembl_sqlite = /cluster/gjb_lab/2394007/pandda_analysis/phase5/prots/.varalign/ensembl_cache.sqlite
gnomad_vcf = /homes/smacgowan/NOBACK/resources/gnomad/gnomad.exomes.r2.0.1.sites.vcf.gz
swissprot = /cluster/gjb_lab/2394007/data/all_species/swissprot_15_09_2023_NR.fasta

## DIRECTORIES

stampdir = /cluster/gjb_lab/2394007/stamp_new/stamp.4.5/defs/

### END OF CONFIG FILE ###