diff --git a/compiler/ballerina-lang/src/main/java/io/ballerina/projects/Package.java b/compiler/ballerina-lang/src/main/java/io/ballerina/projects/Package.java
index 7cd421925a37..b359c13098e5 100644
--- a/compiler/ballerina-lang/src/main/java/io/ballerina/projects/Package.java
+++ b/compiler/ballerina-lang/src/main/java/io/ballerina/projects/Package.java
@@ -463,8 +463,8 @@ public Modifier addModule(ModuleConfig moduleConfig) {
          * @return Package.Modifier which contains the updated package
          */
         public Modifier addDependenciesToml(DocumentConfig documentConfig) {
-            TomlDocumentContext tomlDocumentContext = TomlDocumentContext.from(documentConfig);
-            this.dependenciesTomlContext = tomlDocumentContext;
+            this.dependenciesTomlContext = TomlDocumentContext.from(documentConfig);
+            updateDependencyManifest();
             return this;
         }