Program to Calculate Significance of Topological Congruence between Two Trees
Instructions for running the topological analysis scripts.
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Make a folder named your project.
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Change the outPath= variable in the python script (or jupyter notebook) to point to that folder.
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Within the folder place your two trees labeled: ht.newick = Host Phylogeny mt.newick = Microbiome Dendrogram *** Alternatively you can change the htPath and mtPath to point to trees at different locations.
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Run the script (or execute cells sequentially in notebook)! Results will be output using print().