Merge pull request #224 from naik-aakash/mv_to_src_layout

move to src layout
autoatml · Nov 12, 2024 · 419c524 · 419c524
2 parents 28c5e79 + 6f3dc3d
commit 419c524
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Showing 45 changed files with 105 additions and 103 deletions.
diff --git a/pyproject.toml b/pyproject.toml
@@ -41,7 +41,7 @@ dependencies = [
 ]
 
 [tool.setuptools.packages.find]
-exclude = ["tutorials", "tests"]
+where = ["src"]
 
 [tool.setuptools.package-data]
 "autoplex.fitting.common" = ["*.json"]
@@ -173,7 +173,7 @@ source = [
 ]
 
 [tool.coverage.run]
-include = ["autoplex/*"]
+include = ["src/"]
 
 [tool.mypy]
 ignore_missing_imports = true

diff --git a/autoplex/__init__.py → src/autoplex/__init__.py b/autoplex/__init__.py → src/autoplex/__init__.py
diff --git a/autoplex/auto/__init__.py → src/autoplex/auto/__init__.py b/autoplex/auto/__init__.py → src/autoplex/auto/__init__.py
diff --git a/autoplex/auto/phonons/__init__.py → src/autoplex/auto/phonons/__init__.py b/autoplex/auto/phonons/__init__.py → src/autoplex/auto/phonons/__init__.py
diff --git a/autoplex/auto/phonons/flows.py → src/autoplex/auto/phonons/flows.py b/autoplex/auto/phonons/flows.py → src/autoplex/auto/phonons/flows.py
diff --git a/autoplex/auto/phonons/jobs.py → src/autoplex/auto/phonons/jobs.py b/autoplex/auto/phonons/jobs.py → src/autoplex/auto/phonons/jobs.py
diff --git a/autoplex/auto/rss/__init__.py → src/autoplex/auto/rss/__init__.py b/autoplex/auto/rss/__init__.py → src/autoplex/auto/rss/__init__.py
diff --git a/autoplex/auto/rss/flows.py → src/autoplex/auto/rss/flows.py b/autoplex/auto/rss/flows.py → src/autoplex/auto/rss/flows.py
diff --git a/autoplex/auto/rss/jobs.py → src/autoplex/auto/rss/jobs.py b/autoplex/auto/rss/jobs.py → src/autoplex/auto/rss/jobs.py
diff --git a/...x/auto/rss/rss_default_configuration.yaml → ...x/auto/rss/rss_default_configuration.yaml b/...x/auto/rss/rss_default_configuration.yaml → ...x/auto/rss/rss_default_configuration.yaml
diff --git a/autoplex/benchmark/__init__.py → src/autoplex/benchmark/__init__.py b/autoplex/benchmark/__init__.py → src/autoplex/benchmark/__init__.py
diff --git a/autoplex/benchmark/phonons/__init__.py → src/autoplex/benchmark/phonons/__init__.py b/autoplex/benchmark/phonons/__init__.py → src/autoplex/benchmark/phonons/__init__.py
diff --git a/autoplex/benchmark/phonons/flows.py → src/autoplex/benchmark/phonons/flows.py b/autoplex/benchmark/phonons/flows.py → src/autoplex/benchmark/phonons/flows.py
diff --git a/autoplex/benchmark/phonons/jobs.py → src/autoplex/benchmark/phonons/jobs.py b/autoplex/benchmark/phonons/jobs.py → src/autoplex/benchmark/phonons/jobs.py
diff --git a/autoplex/benchmark/phonons/utils.py → src/autoplex/benchmark/phonons/utils.py b/autoplex/benchmark/phonons/utils.py → src/autoplex/benchmark/phonons/utils.py
diff --git a/autoplex/benchmark/rss/__init__.py → src/autoplex/benchmark/rss/__init__.py b/autoplex/benchmark/rss/__init__.py → src/autoplex/benchmark/rss/__init__.py
diff --git a/autoplex/data/__init__.py → src/autoplex/data/__init__.py b/autoplex/data/__init__.py → src/autoplex/data/__init__.py
diff --git a/autoplex/data/common/__init__.py → src/autoplex/data/common/__init__.py b/autoplex/data/common/__init__.py → src/autoplex/data/common/__init__.py
diff --git a/autoplex/data/common/flows.py → src/autoplex/data/common/flows.py b/autoplex/data/common/flows.py → src/autoplex/data/common/flows.py
diff --git a/autoplex/data/common/jobs.py → src/autoplex/data/common/jobs.py b/autoplex/data/common/jobs.py → src/autoplex/data/common/jobs.py
diff --git a/autoplex/data/common/utils.py → src/autoplex/data/common/utils.py b/autoplex/data/common/utils.py → src/autoplex/data/common/utils.py
diff --git a/autoplex/data/phonons/__init__.py → src/autoplex/data/phonons/__init__.py b/autoplex/data/phonons/__init__.py → src/autoplex/data/phonons/__init__.py
diff --git a/autoplex/data/phonons/flows.py → src/autoplex/data/phonons/flows.py b/autoplex/data/phonons/flows.py → src/autoplex/data/phonons/flows.py
diff --git a/autoplex/data/phonons/jobs.py → src/autoplex/data/phonons/jobs.py b/autoplex/data/phonons/jobs.py → src/autoplex/data/phonons/jobs.py
diff --git a/autoplex/data/phonons/utils.py → src/autoplex/data/phonons/utils.py b/autoplex/data/phonons/utils.py → src/autoplex/data/phonons/utils.py
diff --git a/autoplex/data/rss/__init__.py → src/autoplex/data/rss/__init__.py b/autoplex/data/rss/__init__.py → src/autoplex/data/rss/__init__.py
diff --git a/autoplex/data/rss/flows.py → src/autoplex/data/rss/flows.py b/autoplex/data/rss/flows.py → src/autoplex/data/rss/flows.py
diff --git a/autoplex/data/rss/jobs.py → src/autoplex/data/rss/jobs.py b/autoplex/data/rss/jobs.py → src/autoplex/data/rss/jobs.py
diff --git a/autoplex/data/rss/utils.py → src/autoplex/data/rss/utils.py b/autoplex/data/rss/utils.py → src/autoplex/data/rss/utils.py
diff --git a/autoplex/fitting/__init__.py → src/autoplex/fitting/__init__.py b/autoplex/fitting/__init__.py → src/autoplex/fitting/__init__.py
diff --git a/autoplex/fitting/common/__init__.py → src/autoplex/fitting/common/__init__.py b/autoplex/fitting/common/__init__.py → src/autoplex/fitting/common/__init__.py
diff --git a/autoplex/fitting/common/flows.py → src/autoplex/fitting/common/flows.py b/autoplex/fitting/common/flows.py → src/autoplex/fitting/common/flows.py
diff --git a/autoplex/fitting/common/jobs.py → src/autoplex/fitting/common/jobs.py b/autoplex/fitting/common/jobs.py → src/autoplex/fitting/common/jobs.py
diff --git a/.../fitting/common/mlip-phonon-defaults.json → .../fitting/common/mlip-phonon-defaults.json b/.../fitting/common/mlip-phonon-defaults.json → .../fitting/common/mlip-phonon-defaults.json
diff --git a/...lex/fitting/common/mlip-rss-defaults.json → ...lex/fitting/common/mlip-rss-defaults.json b/...lex/fitting/common/mlip-rss-defaults.json → ...lex/fitting/common/mlip-rss-defaults.json
diff --git a/autoplex/fitting/common/regularization.py → ...autoplex/fitting/common/regularization.py b/autoplex/fitting/common/regularization.py → ...autoplex/fitting/common/regularization.py
diff --git a/autoplex/fitting/common/utils.py → src/autoplex/fitting/common/utils.py b/autoplex/fitting/common/utils.py → src/autoplex/fitting/common/utils.py
diff --git a/autoplex/fitting/phonons/__init__.py → src/autoplex/fitting/phonons/__init__.py b/autoplex/fitting/phonons/__init__.py → src/autoplex/fitting/phonons/__init__.py
diff --git a/autoplex/fitting/phonons/flows.py → src/autoplex/fitting/phonons/flows.py b/autoplex/fitting/phonons/flows.py → src/autoplex/fitting/phonons/flows.py
diff --git a/autoplex/fitting/phonons/jobs.py → src/autoplex/fitting/phonons/jobs.py b/autoplex/fitting/phonons/jobs.py → src/autoplex/fitting/phonons/jobs.py
diff --git a/autoplex/fitting/rss/README.md → src/autoplex/fitting/rss/README.md b/autoplex/fitting/rss/README.md → src/autoplex/fitting/rss/README.md
diff --git a/autoplex/fitting/rss/__init__.py → src/autoplex/fitting/rss/__init__.py b/autoplex/fitting/rss/__init__.py → src/autoplex/fitting/rss/__init__.py
diff --git a/autoplex/fitting/rss/flows.py → src/autoplex/fitting/rss/flows.py b/autoplex/fitting/rss/flows.py → src/autoplex/fitting/rss/flows.py
diff --git a/autoplex/fitting/rss/jobs.py → src/autoplex/fitting/rss/jobs.py b/autoplex/fitting/rss/jobs.py → src/autoplex/fitting/rss/jobs.py
diff --git a/tests/test_data/.pytest-split-durations b/tests/test_data/.pytest-split-durations