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TxDb: Arabidopsis thaliana (May 2021)

  • Organism: Arabidopsis thaliana (taxonomic ID: 3702)
  • Annotation source: Biomart, plantsmart
  • Version: release 51
  • TxDb summary:
TxDb object:
# Db type: TxDb
# Supporting package: GenomicFeatures
# Data source: BioMart
# Organism: Arabidopsis thaliana
# Taxonomy ID: 3702
# Resource URL: plants.ensembl.org:80
# BioMart database: plants_mart
# BioMart database version: Ensembl Plants Genes 51
# BioMart dataset: athaliana_eg_gene
# BioMart dataset description: Arabidopsis thaliana genes (TAIR10)
# BioMart dataset version: TAIR10
# Full dataset: yes
# miRBase build ID: TAIR10
# Nb of transcripts: 54013
# Db created by: GenomicFeatures package from Bioconductor
# Creation time: 2021-05-23 17:17:33 +0200 (Sun, 23 May 2021)
# GenomicFeatures version at creation time: 1.45.0
# RSQLite version at creation time: 2.2.7
# DBSCHEMAVERSION: 1.2
  • Seqinfo:
Seqinfo object with 7 sequences (2 circular) from an unspecified genome:
  seqnames seqlengths isCircular genome
  1          30427671      FALSE   <NA>
  2          19698289      FALSE   <NA>
  3          23459830      FALSE   <NA>
  4          18585056      FALSE   <NA>
  5          26975502      FALSE   <NA>
  Mt           366924       TRUE   <NA>
  Pt           154478       TRUE   <NA>