Add support for Python 3.13

* Upgrade pre-commit dependencies
* Upgrade Python requirements

.github/workflows/test.yml

@@ -9,7 +9,7 @@ on:
 jobs:
   test:
     name: "Test Python ${{ matrix.python-version }}"
-    runs-on: "ubuntu-22.04"
+    runs-on: "ubuntu-24.04"
     strategy:
       fail-fast: false
       matrix:
@@ -18,12 +18,13 @@ jobs:
           "3.10",
           "3.11",
           "3.12",
+          "3.13",
         ]
     steps:
       - name: "Check out repository"
         uses: "actions/checkout@v4"
       - name: "Set up Python ${{ matrix.python-version }}"
-        uses: "actions/setup-python@v4"
+        uses: "actions/setup-python@v5"
         with:
           python-version: "${{ matrix.python-version }}"
           cache: "pip"
@@ -33,27 +34,29 @@ jobs:
       - name: "Install tox"
         run: |
           python -m pip install --upgrade pip
-          pip install tox tox-gh-actions
+          pip install tox
       - name: "Run tox"
         run: |
-          tox -- --cov --cov-config .coveragerc --cov-report xml:coverage.xml
+          tox -e py -- --cov --cov-config .coveragerc --cov-report xml:coverage.xml
       - name: "Upload coverage report"
         if: github.repository == 'artefactual/automation-tools'
-        uses: "codecov/codecov-action@v3"
+        uses: "codecov/codecov-action@v4"
         with:
           files: ./coverage.xml
           fail_ci_if_error: false
           verbose: true
+        env:
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
   lint:
     name: "Lint"
-    runs-on: "ubuntu-22.04"
+    runs-on: "ubuntu-24.04"
     steps:
       - name: "Check out repository"
         uses: "actions/checkout@v4"
       - name: "Set up Python"
-        uses: "actions/setup-python@v4"
+        uses: "actions/setup-python@v5"
         with:
-          python-version: "3.12"
+          python-version: "3.x"
           cache: "pip"
           cache-dependency-path: |
             requirements.txt

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
 - repo: https://github.com/astral-sh/ruff-pre-commit
-  rev: v0.8.5
+  rev: v0.9.1
   hooks:
   - id: ruff
     args: [--fix, --exit-non-zero-on-fix]

requirements-dev.txt

@@ -4,7 +4,7 @@
 #
 #    pip-compile --allow-unsafe --output-file=requirements-dev.txt requirements-dev.in
 #
-amclient==1.3.1
+amclient==1.4.0
     # via -r requirements.txt
 certifi==2024.12.14
     # via
@@ -32,7 +32,7 @@ lxml==5.3.0
     # via
     #   -r requirements.txt
     #   metsrw
-metsrw==0.5.1
+metsrw==0.6.1
     # via -r requirements.txt
 packaging==24.2
     # via pytest
@@ -48,7 +48,7 @@ requests==2.32.3
     # via
     #   -r requirements.txt
     #   amclient
-ruff==0.8.5
+ruff==0.9.1
     # via -r requirements-dev.in
 sqlalchemy==1.4.54
     # via -r requirements.txt

requirements.txt

@@ -4,7 +4,7 @@
 #
 #    pip-compile --allow-unsafe --output-file=requirements.txt requirements.in
 #
-amclient==1.3.1
+amclient==1.4.0
     # via -r requirements.in
 certifi==2024.12.14
     # via requests
@@ -16,7 +16,7 @@ idna==3.10
     # via requests
 lxml==5.3.0
     # via metsrw
-metsrw==0.5.1
+metsrw==0.6.1
     # via -r requirements.in
 requests==2.32.3
     # via

tox.ini

@@ -1,14 +1,7 @@
 [tox]
-envlist = py{39,310,311,312}, linting
+envlist = py, linting
 skipsdist = True
 
-[gh-actions]
-python =
-    3.9: py39
-    3.10: py310
-    3.11: py311
-    3.12: py312
-
 [testenv]
 deps = -rrequirements-dev.txt
 skip_install = True

transfers/reingest.py

@@ -167,8 +167,7 @@ def reingest_full_and_approve(
             transfer = amclient.get_transfer_status()
 
         LOGGER.info(
-            "Attempting to approve transfer following the "
-            "initialization of reingest."
+            "Attempting to approve transfer following the initialization of reingest."
         )
 
         if transfer.get("status") == "USER_INPUT":

transfers/transferargs.py

@@ -51,7 +51,7 @@ def get_parser(doc):
         # command line.
         "--transfer-path",
         metavar="PATH",
-        help="Relative path within the " 'Transfer Source. Default: ""',
+        help='Relative path within the Transfer Source. Default: ""',
         type=fsencode,
         default=b"",
     )
@@ -97,8 +97,7 @@ def get_parser(doc):
     parser.add_argument(
         "--hide",
         action="store_true",
-        help="If set, hide the Transfers and SIPs in the "
-        "dashboard once they complete.",
+        help="If set, hide the Transfers and SIPs in the dashboard once they complete.",
     )
     parser.add_argument(
         "--delete-on-complete",