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DESCRIPTION
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Package: LEXI
Type: Package
Title: LEXI: lncRNA expression imputation
Version: 0.1.0
Author: Aritro Nath
Maintainer: Aritro Nath <aritronath@gmail.com>
Description: LEXI imputes expression profile of an lncRNA of interest from
protein coding gene expression data. The statistical model for imputing
lncRNA expression is generated using a training proteing coding and lncRNA
expression dataset, and applied on a test protein coding dataset to obtain
profile of lncRNA of interest.
This package includes functions to obtain matched training and test
protein coding gene matrices, filtering lncRNA datasets based on percetage
of samples with positive expression of lncRNA, cross-validations to obtain
imputation accucacy and imputation function to get lncRNA profile.
License: GNU-3.0
Encoding: UTF-8
LazyData: true
Depdends: R (>=3.3.0)
Imports: randomForest (>= 4.6-12)
RoxygenNote: 6.1.1
URL: https://github.com/aritronath/LEXI
BugReports: https://github.com/aritronath/LEXI/issues