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@aristoteleo

Aristotle

Foundational software ecosystem for predictive genomics

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  1. dynamo-release dynamo-release Public

    Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

    Python 432 59

  2. spateo-release spateo-release Public

    Spatiotemporal modeling of spatial transcriptomics

    Python 257 32

  3. dynast-release dynast-release Public

    Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments

    Python 17 5

  4. dynamo-tutorials dynamo-tutorials Public

    Tutorials on using latest dynamo package

    Jupyter Notebook 24 11

  5. spateo-viewer spateo-viewer Public

    Web application demonstrating 3D modeling of spatial transcriptomics

    Python 16 5

  6. tabula tabula Public

    federated learning with tabular learning

    Jupyter Notebook 11 3

Repositories

Showing 10 of 46 repositories
  • awesome-bioagent-papers Public

    Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.

    aristoteleo/awesome-bioagent-papers’s past year of commit activity
    Python 17 0 0 5 Updated Jan 23, 2025
  • tabula Public

    federated learning with tabular learning

    aristoteleo/tabula’s past year of commit activity
    Jupyter Notebook 11 3 0 1 Updated Jan 15, 2025
  • dynamo-release Public

    Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

    aristoteleo/dynamo-release’s past year of commit activity
    Python 432 BSD-3-Clause 59 9 (4 issues need help) 13 Updated Dec 28, 2024
  • spateo-release Public

    Spatiotemporal modeling of spatial transcriptomics

    aristoteleo/spateo-release’s past year of commit activity
    Python 257 BSD-2-Clause 32 37 8 Updated Dec 25, 2024
  • spateo-tutorials Public

    tutorials for spateo package

    aristoteleo/spateo-tutorials’s past year of commit activity
    Jupyter Notebook 16 MIT 2 6 0 Updated Dec 25, 2024
  • spateo-viewer Public

    Web application demonstrating 3D modeling of spatial transcriptomics

    aristoteleo/spateo-viewer’s past year of commit activity
    Python 16 BSD-2-Clause 5 3 0 Updated Dec 9, 2024
  • qiu_lab_website Public

    The source code for the Qiu lab website (based on ato-neulab)

    aristoteleo/qiu_lab_website’s past year of commit activity
    HTML 0 MIT 0 8 0 Updated Dec 7, 2024
  • dynamo-tutorials Public

    Tutorials on using latest dynamo package

    aristoteleo/dynamo-tutorials’s past year of commit activity
    Jupyter Notebook 24 11 4 0 Updated Oct 29, 2024
  • CSP4ML Public

    repo for modeling and analyzing metabolic labeling data

    aristoteleo/CSP4ML’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Oct 6, 2024
  • dynamo_readthedocs Public

    deposit tutorials for dynamo readthedocs pages

    aristoteleo/dynamo_readthedocs’s past year of commit activity
    Python 0 BSD-3-Clause 6 0 0 Updated Sep 19, 2024
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