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arc85/celltalker
Error in apply(expr[rownames(expr) %in% ligand_receptor_pairs$ligand, : dim(X)的值必需是正数

Error in apply(expr[rownames(expr) %in% ligand_receptor_pairs$ligand, : dim(X)的值必需是正数
  • zhangdi19920915
  • Opened 
    on Jan 6
  • #32

arc85/celltalker
Help figuring out what part of my object is throwing the subscript out of bounds error

Hello again. When running the initial celltalk function, I encounter the following error: .subscript.2ary(x, i, j, drop = TRUE) : subscript out of bounds. I ve included the traceback below. This error ...
  • JasperGattiker
  • Opened 
    on Jun 12, 2024
  • #31

arc85/celltalker
Using SCT as the assay

Hello! I attempted to run CellTalker on an integrated object and encountered an error, which I resolved. I ll say what my problem was at the bottom for posterity, in case anyone else runs into the issue. ...
  • JasperGattiker
  • Opened 
    on Jun 12, 2024
  • #30

arc85/celltalker
Error in receptor_mean_dataframe[rec.use, ] : subscript out of bounds

Hello, team celltalker! Thank you for developing this wonderful R package. I ran the code according to your tutorial. And I got the following error message: Error in receptor_mean_dataframe[rec.use, ...
  • Zijiang8
  • 1
  • Opened 
    on Jun 3, 2023
  • #29

arc85/celltalker
Error in 'compare_group_interactions'

Hi celltalkerTeam When I tried to run compare_group_interactions() , it returns: Error: The validate argument of as_tibble() was deprecated in tibble 2.0.0 and is now defunct. Please use the .name_repair ...
  • Hi-ZSY
  • Opened 
    on May 16, 2023
  • #28

arc85/celltalker
compare_group_interactions

Excuse me, can you put an example of compare_group_interactions function? The parameters are not clear. Thank you
  • cjzhuo
  • Opened 
    on Feb 9, 2023
  • #27

arc85/celltalker
Error: object 'reshape_matrices' not found

Hi celltalkerTeam : There is an Error: object reshape_matrices not found ,how to deal with it ? look forward to your reply！
  • shuiruoyou
  • 5
  • Opened 
    on Dec 22, 2022
  • #26

arc85/celltalker
celltalk function not found

while using reshape_matrices() got: could not find function reshape_matrices Does my celltalker version wrong?
  • BohrXD
  • 3
  • Opened 
    on Oct 11, 2022
  • #24

arc85/celltalker
celltalk function notfound

Hello arc85! I have installed celltalker v0.0.3.9000, and library celltalker, when run hca_bm_interactions - celltalk(input_object=hca_bm, metadata_grouping= cell_types , ligand_receptor_pairs=ramilowski_pairs, ...
  • chilijuido23
  • 1
  • Opened 
    on Apr 18, 2022
  • #18

arc85/celltalker
Run celltalker with no replicate data

Hi, Thanks for devloping celltalker!! I am a newer to use celltalker to find out the ligand and receptor in neuron cell type. But I don t have replicates and consistent.lig.recs seems to have nothing. ...
  • Jihong528
  • 2
  • Opened 
    on Apr 26, 2021
  • #10
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