Merge branch 'main' of github.com:loreloc/sos-npcs

slurm/launch.sh

@@ -4,36 +4,42 @@ export PROJECT_NAME="sos-npcs"
 export PYTHONPATH=${PYTHONPATH:-src}
 
 # These flags need to be updated accordingly:
-# SCRATCH_DIR: a directory within the local filesystem of a node
 # EXPS_ID: some identifier for the experiments
 # VENV_PATH: the path containing the pip virtual environment
-export SCRATCH_DIR=${SCRATCH_DIR:-/disk/scratch_big/$USER}
 export EXPS_ID=${EXPS_ID:-exps}
 export VENV_PATH=${VENV_PATH:-venv}
 
 # The Slurm partition to use, e.g.,
 #PARTITION=PGR-Standard
-PARTITION=${PARTITION:-}
+PARTITION=${PARTITION:-PGR-Standard}
 # An optional list of Slurm node to exclude, e.g.,
 #EXCL_NODES=${EXCL_NODES:-busynode[01-07]}
-EXCL_NODES=${EXCL_NODES:-}
-# An optional list of Slurm node to allow
-LIST_NODES=${LIST_NODES:-}
+EXCL_NODES=${EXCL_NODES:-crannog[01-07],damnii[05-08]}
 # The maximum number of parallel jobs to dispatch
 MAX_PARALLEL_JOBS=12
 
 # Resources and maximum execution time
 NUM_CPUS=2
 NUM_GPUS=1
-TIME=120:00:00
+TIME=167:00:00
 
 JOB_NAME="$PROJECT_NAME-$EXPS_ID"
-OUTPUT="slurm/logs/$JOB_NAME-%j.out"
+LOG_DIRECTORY="slurm/logs/$PROJECT_NAME/$EXPS_ID"
+LOG_OUTPUT="$LOG_DIRECTORY/%j.out"
 EXPS_FILE="$1"
 NUM_EXPS=`cat ${EXPS_FILE} | wc -l`
 
-sbatch --job-name $JOB_NAME --output "$OUTPUT" --partition "$PARTITION" \
-  --nodes 1 --ntasks 1 --cpus-per-task $NUM_CPUS --gres=gpu:$NUM_GPUS \
-  --time $TIME --exclude "$EXCL_NODES" \
+echo "Creating slurm logging directory $LOG_DIRECTORY"
+mkdir -p "$LOG_DIRECTORY"
+
+echo "Slurm job settings"
+echo "Partition: $PARTITION"
+echo "Excl nodes: $EXCL_NODES"
+
+sbatch --job-name $JOB_NAME --output "$LOG_OUTPUT" --error "$LOG_OUTPUT" \
+  --partition "$PARTITION" --nodes 1 --ntasks 1 \
+  --cpus-per-task $NUM_CPUS --gres=gpu:$NUM_GPUS \
+  --time $TIME --exclude="$EXCL_NODES" \
   --array=1-${NUM_EXPS}%${MAX_PARALLEL_JOBS} \
   slurm/run.sh "$EXPS_FILE"
+

slurm/run.sh

@@ -1,5 +1,16 @@
 #!/bin/bash
 
+# Find a suitable scratch directory
+SCRATCH_DIR="/disk/scratch_big"
+if [ ! -w "$SCRATCH_DIR" ]
+then
+	SCRATCH_DIR="/disk/scratch"
+fi
+
+echo "Running job on the partition $SLURM_JOB_PARTITION"
+echo "        and on the node $SLURMD_NODENAME"
+echo "Using scratch directory $SCRATCH_DIR"
+
 RESULTS_PATH="$SCRATCH_DIR/$SLURM_JOB_ID"
 DESTINATION_PATH="$HOME/$PROJECT_NAME"
 TBOARD_DIR="$RESULTS_PATH/tboard-runs/$EXPS_ID"