From 037f60b52ba8d85344c8235a948b42702ac1591e Mon Sep 17 00:00:00 2001 From: Alex Kong Date: Wed, 4 Dec 2024 11:56:19 -0800 Subject: [PATCH 1/3] Convert peak image initialization to use 32-bit float --- src/maldi_tools/extraction.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/maldi_tools/extraction.py b/src/maldi_tools/extraction.py index db35e06..40c25d9 100644 --- a/src/maldi_tools/extraction.py +++ b/src/maldi_tools/extraction.py @@ -264,7 +264,7 @@ def coordinate_integration(peak_df: pd.DataFrame, imz_data: ImzMLParser) -> xr.D image_shape: Tuple[int, int] = (x_size, y_size) - imgs = np.zeros((len(unique_peaks), *image_shape)) + imgs = np.zeros((len(unique_peaks), *image_shape), dtype=np.float32) for idx, (x, y, _) in tqdm(enumerate(imz_data.coordinates), total=len(imz_data.coordinates)): mzs, intensities = imz_data.getspectrum(idx) From ce3d95ffeae2403754cf407e47ccd3c6fa529271 Mon Sep 17 00:00:00 2001 From: Alex Kong Date: Wed, 15 Jan 2025 11:50:21 -0800 Subject: [PATCH 2/3] Ensure compatibility with Python 3.12 --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index a93441d..707d6e2 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -7,7 +7,7 @@ readme = "README.md" packages = [{ include = "maldi_tools", from = "src" }] [tool.poetry.dependencies] -python = ">=3.10,<3.12" +python = ">=3.10,<3.13" matplotlib = "^3.7.1" numpy = "^1.24.2" xarray = "^2023.2.0" From f92c1924aab273631fb11c9bf6f7bc42b2e936cb Mon Sep 17 00:00:00 2001 From: Alex Kong Date: Wed, 15 Jan 2025 11:56:06 -0800 Subject: [PATCH 3/3] Update lock file --- poetry.lock | 3304 ++++++++++++++++++++++++++++----------------------- 1 file changed, 1786 insertions(+), 1518 deletions(-) diff --git a/poetry.lock b/poetry.lock index 1cfe20b..f4755f4 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. 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