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install_rmarkdown.html
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<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8" />
<meta name="generator" content="pandoc" />
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />
<title>Installing R Markdown</title>
<script src="site_libs/header-attrs-2.20/header-attrs.js"></script>
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
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margin-left: auto;
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var dropdown = menuAnchor.closest('li.dropdown');
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menuAnchor.addClass('active');
dropdown.find('> .dropdown-toggle').addClass('active');
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menuAnchor.parent().addClass('active');
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display: block;
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#TOC {
margin: 25px 0px 20px 0px;
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position: relative;
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/* see https://github.com/w3c/csswg-drafts/issues/4434 */
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</head>
<body>
<div class="container-fluid main-container">
<!-- setup 3col/9col grid for toc_float and main content -->
<div class="row">
<div class="col-xs-12 col-sm-4 col-md-3">
<div id="TOC" class="tocify">
</div>
</div>
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<div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
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<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="index.html">Intro2R</a>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
<a href="setup.html">
<span class="fa fa-cog"></span>
Setup
</a>
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
<span class="fa fa-book"></span>
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</a>
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<li>
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</a>
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<a href="https://github.com/alexd106/Rbook/raw/master/docs/Rbook.pdf">
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<div id="header">
<h1 class="title toc-ignore">Installing R Markdown</h1>
</div>
<p> </p>
<p>###Installing R Markdown on a compter running MS Windows</p>
<p>This guide assumes you have already installed <a
href="https://www.r-project.org">R</a> and the <a
href="https://www.rstudio.com">RStudio IDE</a>. RStudio is not required
but recommended, because it makes it easier to work with R Markdown. If
you do not have RStudio IDE installed, you will also have to install <a
href="http://pandoc.org">Pandoc</a>. If you have RStudio installed there
is no need to install Pandoc separately because its bundled with
RStudio. Next you can install the rmarkdown package in RStudio using the
following code:</p>
<div class="sourceCode" id="cb1"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" tabindex="-1"></a><span class="co"># Install from CRAN</span></span>
<span id="cb1-2"><a href="#cb1-2" tabindex="-1"></a><span class="fu">install.packages</span>(<span class="st">"rmarkdown"</span>, <span class="at">dep =</span> <span class="cn">TRUE</span>)</span></code></pre></div>
<p>You will also need to install a bunch of additional R packages on
which rmarkdown depends.</p>
<p>If you want to generate PDF output, you will need to install LaTeX.
For R Markdown users who have not installed LaTeX before, we recommend
that you install <a href="https://yihui.name/tinytex/">TinyTeX</a>. You
can install TinyTex from within RStudio using the following code:</p>
<div class="sourceCode" id="cb2"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb2-1"><a href="#cb2-1" tabindex="-1"></a><span class="fu">install.packages</span>(<span class="st">"tinytex"</span>)</span>
<span id="cb2-2"><a href="#cb2-2" tabindex="-1"></a>tinytex<span class="sc">::</span><span class="fu">install_tinytex</span>() <span class="co"># install TinyTeX</span></span></code></pre></div>
<p>TinyTeX is a lightweight, portable, cross-platform, and
easy-to-maintain LaTeX distribution. The R companion package tinytex can
help you automatically install missing LaTeX packages when compiling
LaTeX or R Markdown documents to PDF. An alternative option would be to
install MiKTeX instead. You can download the latest distribution of <a
href="https://miktex.org/download">MiKTeX</a>. Installing MiKTeX is
pretty straight forward, but it can sometimes be a pain to get it to
play nicely with RStudio. If at all possible we recommend that you use
TinyTex.</p>
<p>With the rmarkdown package, RStudio/Pandoc, and LaTeX, you should be
able to compile most R Markdown documents.</p>
<p> </p>
<p>###Installing R Markdown on a compter running Mac OSX</p>
<p>This guide assumes you have already installed <a
href="https://www.r-project.org">R</a> and the <a
href="https://www.rstudio.com">RStudio IDE</a>. RStudio is not required
but recommended, because it makes it easier to work with R Markdown. If
you do not have RStudio IDE installed, you will also have to install <a
href="http://pandoc.org">Pandoc</a>. If you have RStudio installed there
is no need to install Pandoc separately because its bundled with
RStudio. Next you can install the rmarkdown package in RStudio using the
following code:</p>
<div class="sourceCode" id="cb3"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb3-1"><a href="#cb3-1" tabindex="-1"></a><span class="co"># Install from CRAN</span></span>
<span id="cb3-2"><a href="#cb3-2" tabindex="-1"></a><span class="fu">install.packages</span>(<span class="st">"rmarkdown"</span>, <span class="at">dep =</span> <span class="cn">TRUE</span>)</span></code></pre></div>
<p>You will also need to install a bunch of additional R packages on
which rmarkdown depends.</p>
<p>If you want to generate PDF output, you will need to install LaTeX.
For R Markdown users who have not installed LaTeX before, we recommend
that you install <a href="https://yihui.name/tinytex/">TinyTeX</a>. You
can install TinyTex from within RStudio using the following code:</p>
<div class="sourceCode" id="cb4"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb4-1"><a href="#cb4-1" tabindex="-1"></a><span class="fu">install.packages</span>(<span class="st">"tinytex"</span>)</span>
<span id="cb4-2"><a href="#cb4-2" tabindex="-1"></a>tinytex<span class="sc">::</span><span class="fu">install_tinytex</span>() <span class="co"># install TinyTeX</span></span></code></pre></div>
<p>TinyTeX is a lightweight, portable, cross-platform, and
easy-to-maintain LaTeX distribution. The R companion package tinytex can
help you automatically install missing LaTeX packages when compiling
LaTeX or R Markdown documents to PDF.</p>
<p>If for some reason TinyTeX does not work on your Mac computer then
you can try to install MacTeX instead. You can download the latest
version of <a
href="http://www.tug.org/mactex/mactex-download.html">MacTeX</a>. Click
on the <em>MacTeX.pkg</em> link to download. Please be aware that the
file is quite large, approximately 3 GB, so it may take some time (also
make sure you have enough available space on your computer hard disk).
When your download is complete, run the downloaded installer. The
installation procedure is quite straightforward. You are given a few
options, for example you can choose not to install some components. I
recommend you stick with the default settings, so having accepted the
license agreement, you can basically just keep clicking ‘Continue’ on
each screen. On the final screen of the wizard, click Install. It may
ask for an administrator password. Enter the password, click ‘Install
Software’ and go make a cup of coffee while the installation completes.
When the program is done installing, click ‘Close’ to complete the
installation.</p>
<p>With the rmarkdown package, RStudio/Pandoc, and LaTeX, you should be
able to compile most R Markdown documents.</p>
<p> </p>
<p>###Installing R Markdown on a University teaching computer</p>
<p>The University computers already have R and RStudio installed with
the required R packages (rmarkdown, knitr etc). However, if you want to
generate PDF output, you will need to install LaTeX. For R Markdown
users who have not installed LaTeX before, we recommend that you install
<a href="https://yihui.name/tinytex/">TinyTeX</a>. You can install
TinyTex from within R:</p>
<div class="sourceCode" id="cb5"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb5-1"><a href="#cb5-1" tabindex="-1"></a><span class="fu">install.packages</span>(<span class="st">"tinytex"</span>)</span>
<span id="cb5-2"><a href="#cb5-2" tabindex="-1"></a>tinytex<span class="sc">::</span><span class="fu">install_tinytex</span>() <span class="co"># install TinyTeX</span></span></code></pre></div>
<p>TinyTeX is a lightweight, portable, cross-platform, and
easy-to-maintain LaTeX distribution. The R companion package tinytex can
help you automatically install missing LaTeX packages when compiling
LaTeX or R Markdown documents to PDF.</p>
<p>With the rmarkdown package, RStudio/Pandoc, and LaTeX, you should be
able to compile most R Markdown documents.</p>
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