Adding template manager file #25
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| name: CI | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| workflow_dispatch: | |
| jobs: | |
| lint: | |
| name: lint and style checks | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install black black[jupyter] ruff | |
| - name: Black style check | |
| run: | | |
| black --check . | |
| - name: Lint with ruff | |
| run: | | |
| ruff check . | |
| build_0: | |
| name: raw2zarr unit tests - linux | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| CONDA_ENV_FILE: environment.yml | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [ "3.12" ] | |
| numpy-version: [ "1", "2" ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install micromamba environment | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: raw2zarr-unit-tests | |
| environment-file: ${{env.CONDA_ENV_FILE}} | |
| cache-environment: true | |
| cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | |
| create-args: >- | |
| python=${{matrix.python-version}} | |
| numpy=${{matrix.numpy-version}} | |
| conda | |
| - name: Install raw2zarr | |
| run: | | |
| python -m pip install . --no-deps | |
| - name: Install Test Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install pytest pytest-xdist pytest-cov | |
| - name: Version Info | |
| run: | | |
| python -c "import raw2zarr; print(raw2zarr.__version__)" | |
| - name: Test with pytest | |
| run: | | |
| pytest -n auto --dist loadfile --verbose --durations=15 --cov-report xml:coverage_unit.xml --cov=raw2zarr --cov-append | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| file: ./coverage_unit.xml | |
| flags: unittests | |
| env_vars: RUNNER_OS,PYTHON_VERSION | |
| name: codecov-gha | |
| fail_ci_if_error: false | |
| token: ${{ secrets.CODECOV_TOKEN}} |