NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method("!=",gEdge)
S3method("!=",gGraph)
S3method("!=",gNode)
S3method("+",Junction)
S3method("+",gGraph)
S3method("==",gEdge)
S3method("==",gGraph)
S3method("==",gNode)
S3method("[",Junction)
S3method("[",gEdge)
S3method("[",gGraph)
S3method("[",gNode)
S3method("[",gWalk)
S3method(c,Junction)
S3method(c,gEdge)
S3method(c,gGraph)
S3method(c,gNode)
S3method(c,gWalk)
S3method(dim,gGraph)
S3method(length,Junction)
S3method(length,gEdge)
S3method(length,gGraph)
S3method(length,gNode)
S3method(length,gWalk)
S3method(merge,Junction)
S3method(sum,gGraph)
S3method(unique,Junction)
export("%nin%")
export(Junction)
export(Rcplex2)
export(amp)
export(balance)
export(binstats)
export(chromoplexy)
export(chromothripsis)
export(cougar2gg)
export(cov2arrow)
export(cov2cov.js)
export(cov2csv)
export(del)
export(dunlist)
export(dup)
export(embedloops)
export(events)
export(fitcn)
export(fusions)
export(gEdge)
export(gG)
export(gGnome.js)
export(gGraph)
export(gNode)
export(gW)
export(gWalk)
export(gen_js_coverage_files)
export(gen_js_datafiles)
export(gen_js_instance)
export(gstat)
export(haplograph)
export(intersect.Junction)
export(intersect.gEdge)
export(intersect.gNode)
export(j.dist)
export(jJ)
export(jab2json)
export(karyotype)
export(label.runs)
export(lengths)
export(lengths.gWalk)
export(merge)
export(merge.Junction)
export(microhomology)
export(nodestats)
export(peel)
export(pgv)
export(phased.binstats)
export(proximity)
export(qrp)
export(ra.merge)
export(read_cmap)
export(read_xmap)
export(reciprocal)
export(refresh)
export(setxor)
export(simple)
export(split.gGraph)
export(tic)
export(transplant)
exportMethods("%&%")
exportMethods("%^%")
exportMethods(lengths)
exportMethods(refresh)
exportMethods(seqinfo)
exportMethods(seqlengths)
exportMethods(seqlevels)
exportMethods(setdiff)
exportMethods(union)
exportMethods(width)
import(R6)
import(data.table)
import(fishHook)
import(jsonlite)
import(methods)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,match)
importFrom(GenomicRanges,reduce)
importFrom(GenomicRanges,setdiff)
importFrom(GenomicRanges,split)
importFrom(GenomicRanges,values)
importFrom(Matrix,Matrix)
importFrom(Matrix,colSums)
importFrom(Matrix,diag)
importFrom(Matrix,rowSums)
importFrom(Matrix,sparseMatrix)
importFrom(Matrix,t)
importFrom(Matrix,which)
importFrom(RCurl,url.exists)
importFrom(VariantAnnotation,info)
importFrom(VariantAnnotation,readVcf)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,fread)
importFrom(data.table,setkey)
importFrom(data.table,setkeyv)
importFrom(data.table,setnames)
importFrom(gTrack,gTrack)
importFrom(gUtils,"%$%")
importFrom(gUtils,"%&%")
importFrom(gUtils,"%Q%")
importFrom(gUtils,"%^%")
importFrom(gUtils,dt2gr)
importFrom(gUtils,gr.breaks)
importFrom(gUtils,gr.disjoin)
importFrom(gUtils,gr.dist)
importFrom(gUtils,gr.duplicated)
importFrom(gUtils,gr.end)
importFrom(gUtils,gr.findoverlaps)
importFrom(gUtils,gr.fix)
importFrom(gUtils,gr.flipstrand)
importFrom(gUtils,gr.in)
importFrom(gUtils,gr.match)
importFrom(gUtils,gr.nochr)
importFrom(gUtils,gr.quantile)
importFrom(gUtils,gr.rand)
importFrom(gUtils,gr.reduce)
importFrom(gUtils,gr.sample)
importFrom(gUtils,gr.setdiff)
importFrom(gUtils,gr.simplify)
importFrom(gUtils,gr.start)
importFrom(gUtils,gr.string)
importFrom(gUtils,gr.stripstrand)
importFrom(gUtils,gr.sum)
importFrom(gUtils,gr.tile)
importFrom(gUtils,gr.tile.map)
importFrom(gUtils,gr.val)
importFrom(gUtils,gr2dt)
importFrom(gUtils,grbind)
importFrom(gUtils,grl.bind)
importFrom(gUtils,grl.eval)
importFrom(gUtils,grl.in)
importFrom(gUtils,grl.pivot)
importFrom(gUtils,grl.unlist)
importFrom(gUtils,hg_seqlengths)
importFrom(gUtils,parse.gr)
importFrom(gUtils,ra.duplicated)
importFrom(gUtils,ra.overlaps)
importFrom(gUtils,rrbind)
importFrom(gUtils,seg2gr)
importFrom(gUtils,si2gr)
importFrom(gUtils,streduce)
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,clusters)
importFrom(igraph,graph)
importFrom(igraph,graph.adjacency)
importFrom(igraph,induced.subgraph)
useDynLib(gGnome)