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[tools] error in data_integrity/update_candidate_latest_diagnosis.php #9710 #9718

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[tools] error in data_integrity/update_candidate_latest_diagnosis.php #9710 #9718

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2cbc18a
fix
kongtiaowang Mar 18, 2025
a36153e
Update update_candidate_latest_diagnosis.php
kongtiaowang Mar 21, 2025
197592c
Update update_candidate_latest_diagnosis.php
kongtiaowang Mar 27, 2025
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21 changes: 8 additions & 13 deletions tools/data_integrity/update_candidate_latest_diagnosis.php
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Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,6 @@

use LORIS\StudyEntities\Candidate\CandID;

$DB = \NDB_Factory::singleton()->database();
$candIDs = $DB->pselectCol(
"SELECT CandID FROM candidate
WHERE Entity_type='Human' AND Active='Y'",
Expand All @@ -42,15 +41,6 @@
$diagnosisTrajectoryByProject[$data['ProjectID']][] = $data;
}

$loris = new \LORIS\LorisInstance(
$DB,
\NDB_Factory::singleton()->config(),
[
"project/modules",
"modules",
]
);

foreach ($candIDs as $candID) {
$candidate = \Candidate::singleton(new CandID(strval($candID)));
$candidateVisits = $candidate->getListOfVisitLabels();
Expand Down Expand Up @@ -97,7 +87,7 @@

// get instrument instance data
$instrument = \NDB_BVL_Instrument::factory(
$loris,
$lorisInstance,
$data['instrumentName'],
$commentID
);
Expand All @@ -114,7 +104,7 @@

if (!empty($diagnosis)) {
$timepoint = \TimePoint::singleton(
new SessionID($sessionID)
new SessionID(strval($sessionID))
);
// Check for Visit Status 'Pass' and
// Approval Status at least 'In Progress'
Expand All @@ -124,8 +114,13 @@
&& $timepoint->getApprovalStatus() !== null
) ? 'Y' : 'N';

$candidateID = $DB->pselectOne(
"SELECT ID FROM candidate WHERE CandID=:CandID",
["CandID" => $candID]
);

$set = [
'CandID' => $candID,
'CandidateID' => $candidateID,
'DxEvolutionID' => $data['DxEvolutionID'],
'Diagnosis' => json_encode($diagnosis),
'Confirmed' => $confirmed
Expand Down
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