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BaseVarC needs a lot of memory to run successfully #8

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thanhtruc66 opened this issue Jul 30, 2024 · 0 comments
Open

BaseVarC needs a lot of memory to run successfully #8

thanhtruc66 opened this issue Jul 30, 2024 · 0 comments

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@thanhtruc66
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Dear Author,

I have used BaseVar on 5 BAM files, each approximately 3GB in size, but it requires a substantial amount of memory to run successfully, specifically up to 400GB. I would like to know if I am running it correctly. The command I used is as follows:

basevar basetype  --reference "reference/GCA_000003025.6_Sscrofa11.1_genomic.fa" 
--input bam.list  --output pig --batch 5 --thread 32
@thanhtruc66 thanhtruc66 changed the title Basevar needs a lot of memory to run successfully BaseVarC needs a lot of memory to run successfully Jul 30, 2024
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@thanhtruc66