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ZhangGroup-MITChemistry

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  1. OpenABC OpenABC Public

    OpenMM implementation of MOFF, MRG-CG, and HPS models.

    Python 26 6

  2. OpenNucleome OpenNucleome Public

    Jupyter Notebook 19

  3. DRAGON DRAGON Public

    Python 12 1

  4. MOFF MOFF Public

    Implementation of MOFF force field. Please cite us at Latham, A; Zhang, B J. Chem. Theory Comput. 2021, 17, 3134. (https://pubs.acs.org/doi/abs/10.1021/acs.jctc.0c01220)

    Python 9 3

  5. PCCG PCCG Public

    Potential Contrasting Coarse-Graining

    Python 9

  6. DiploidGenomeOrganization DiploidGenomeOrganization Public

    C++ 4

Repositories

Showing 10 of 22 repositories
  • Schake_GNN Public

    Multiscale Schake graph neural network for proteins

    ZhangGroup-MITChemistry/Schake_GNN’s past year of commit activity
    Python 0 0 0 0 Updated Jan 21, 2025
  • ChromoGen Public
    ZhangGroup-MITChemistry/ChromoGen’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Dec 5, 2024
  • OpenABC Public

    OpenMM implementation of MOFF, MRG-CG, and HPS models.

    ZhangGroup-MITChemistry/OpenABC’s past year of commit activity
    Python 26 MIT 6 3 1 Updated Sep 30, 2024
  • tetra-nucl-msm Public
    ZhangGroup-MITChemistry/tetra-nucl-msm’s past year of commit activity
    Roff 1 0 0 0 Updated Jul 18, 2024
  • CodeDynPTChrXHist Public
    ZhangGroup-MITChemistry/CodeDynPTChrXHist’s past year of commit activity
    Cython 0 0 0 0 Updated Apr 17, 2024
  • Explicit_Ion_Chromatin Public

    Lammps Implementation of the Explicit-ion Residue-resolution Chromatin Model

    ZhangGroup-MITChemistry/Explicit_Ion_Chromatin’s past year of commit activity
    C++ 1 MIT 1 0 0 Updated Apr 6, 2024
  • OpenNucleome Public
    ZhangGroup-MITChemistry/OpenNucleome’s past year of commit activity
    Jupyter Notebook 19 MIT 0 2 0 Updated Mar 27, 2024
  • brd2-reanalysis Public
    ZhangGroup-MITChemistry/brd2-reanalysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 22, 2024
  • ELP Public

    Code to calculate the surface tension and micropolarity from multiscale simulations of ELP condensates

    ZhangGroup-MITChemistry/ELP’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Sep 6, 2023
  • DRAGON Public
    ZhangGroup-MITChemistry/DRAGON’s past year of commit activity
    Python 12 GPL-3.0 1 0 0 Updated Jun 16, 2023
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