Poisson point process simulation of spatial population dynamics

This repository contains source code (R/Rcpp) required to run spatial population dynamics simualation.

Installation

Windows

• Install R (R Installer) - latest version used is 4.0.5
• Install Rtools (Rtools Installer)
• Install required R packages from CRAN (devtools, Rcpp)
• Install 1.75.0-0 version of BH package using devtools. Remove BH package if version is 1.78 or higher using remove.packages("BH")
• Install this source package using devtools

devtools::install_version("BH",version = "1.75.0-0")
devtools::install_github("YegorGalkin/RcppSim")

Usage

See examples for simulator usage in "examples" folder

Changelog

April 2021

• Removed population cap parameter on simulations
• Added realtime limit parameter on simulations
• Birth kernel is now passed as quantile function for radius distribution
• Added R function wrappers for initializing and running simulators
• Added examples for running 1d simulations and parallel execution
• Added some parameter value checks and default values for model
• Added experimental function for batch running simulations
• Standartized interfaces between 1d,2d and 3d simulations
• Added documentation for functions via roxygen2
• Fixed package initialization and function registration (Rcpp)