CI_Container.yml

name: Bare Test with Rosetta Container Node

on:
  push:
    branches: [main]
  pull_request:
    branches: [main]
  release:
    types: [created]
  workflow_dispatch:

env:
  GITHUB_CONTAINER_ROSETTA_TEST: "YES" # Github Actions: run python against container node
  GITHUB_ROSETTA_TEST: "YES" # skip some integration tests

jobs:
  RosettaTests:
    strategy:
      fail-fast: false
      matrix:
        os:
          - ubuntu-latest

    runs-on: ${{ matrix.os }}

    defaults:
      run:
        shell: bash -el {0}

    concurrency:
      group: ${{ github.workflow }}-${{ github.ref }}
      cancel-in-progress: ${{ github.ref != 'refs/heads/main' }}

    steps:
      - name: Checkout Repository
        uses: actions/checkout@v4

      - name: Setup Python
        uses: actions/setup-python@v5
        with:
          python-version: 3.11

      - name: Setup Dependency on Ubuntu
        if: matrix.os == 'ubuntu-latest'
        run: |
          sudo apt-get update -y
          sudo apt-get install -y build-essential gnupg2 git
          sudo bash scripts/upgrade_git.sh

      - name: Verify Docker Version and Pull Rosetta Image
        run: |
          docker --version
          docker pull --platform=linux/amd64 rosettacommons/rosetta:mpi

      - name: Setup RosettaPy on ${{ matrix.os }}
        run: |
          pip install '.[test]' -U

      - name: Run test cases
        run: |
          pytest tests/ -m 'integration'

      - name: Upload coverage reports to Codecov
        uses: codecov/codecov-action@v5
        with:
          files: ./coverage.xml
          fail_ci_if_error: false
        env:
          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}