restructure doxyen doc (#34) #72
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| # Requires following secrets and variables: | |
| # | |
| # variables: | |
| # - DOCKER_REPO: repository to be pushed to. | |
| # - DOCKER_USERNAME: the user name of the repository owner. | |
| # - SYLABS_USERNAME: the user name of sylab repo owner | |
| # | |
| # secrets: | |
| # - DOCKER_TOKEN: access token to dockerhub | |
| # - SYLABS_TOKEN: access token to sylab server | |
| name: deploy-container | |
| on: | |
| push: | |
| branches: [ edwin_dev ] | |
| workflow_dispatch: | |
| jobs: | |
| docker-build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| submodules: 'true' | |
| - name: Login to Docker Hub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ vars.DOCKER_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Build and push | |
| uses: docker/build-push-action@v6 | |
| with: | |
| push: true | |
| context: util/container | |
| tags: ${{ vars.DOCKER_USERNAME }}/${{ vars.DOCKER_REPO }} | |
| build-args: | | |
| THREAD_NUM=4 | |
| R3B_BRNAME=${{ github.head_ref || github.ref_name }} | |
| apptainer-build: | |
| runs-on: ubuntu-latest | |
| needs: docker-build | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| submodules: 'true' | |
| - name: build apptainer and push | |
| run: | | |
| sudo add-apt-repository -y ppa:apptainer/ppa | |
| sudo apt-get update | |
| sudo apt-get install -y apptainer | |
| apptainer remote add --no-login SylabsCloud cloud.sycloud.io | |
| echo "${{ secrets.SYLABS_TOKEN }}" | apptainer remote login SylabsCloud | |
| set -e | |
| apptainer delete -F library://${{ vars.SYLABS_USERNAME }}/r3bdev/${image_tag} || true | |
| sudo apptainer build --notest neuland.sif ./util/container/neuland.def | |
| apptainer push -D "For testing" -U neuland.sif library://${{ vars.SYLABS_USERNAME }}/r3bdev/${image_tag} | |
| shell: bash | |
| env: | |
| image_tag: 'neuland:latest' |