This is the code repository associated with the paper Huggins et al. Hotspots for social and ecological impacts from freshwater stress and storage loss. Nature Communications (2022). https://doi.org/10.1038/s41467-022-28029-w.
Repository structure:
Note: Individual scripts are annotated and a description is provided at the top of each script.
The order of the folders below is the required workflow to reproduce any results from the study. Code numberings within folders, e.g. 1-..., 2-..., etc., indicate either the necessary or suggested order to sequence the codes.
- R/ --
- setup/ -- scripts that import necessary packages and set common plotting arguments
- udf/ -- scripts with custom functions and are described at the top of each script
- preprocessing/ -- scripts that spatially harmonize and otherwise prepare data for analysis
- analysis/ -- scripts that perform core analyses of this study, including uncertainty and sensitivity analyses
- plotting+stats/ -- scripts that create all plots and calculate summary statistics reported in the study