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genesis_gwas.json
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{
"primed_genesis_gwas.vcf_files" : [
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr1.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz",
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr2.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz",
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr3.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz",
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr4.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz",
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr5.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz",
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr6.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz",
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr7.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz",
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr8.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz",
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr9.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz",
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr10.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz",
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr11.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz",
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr12.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz",
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr13.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz",
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr14.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz",
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr15.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz",
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr16.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz",
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr17.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz",
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr18.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz",
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr19.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz",
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr20.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz",
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr21.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz",
"gs://terra-featured-workspaces/GWAS/1kg-genotypes/vcf_maf001/ALL.chr22.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.bi_maf001.vcf.bgz"
],
"primed_genesis_gwas.pheno_file": "gs://fc-8dc38d1d-c3f4-46de-8d4c-176967d6663e/GWAS/phenotypes_ldl_gwas.csv",
"primed_genesis_gwas.outcome": "ldl",
"primed_genesis_gwas.outcome_type": "quantitative",
"primed_genesis_gwas.outcome_unit": "mg/dL",
"primed_genesis_gwas.outcome_definition": "Blood mass concentration of low-density lipoprotein cholesterol",
"primed_genesis_gwas.covariates": "sex,age_at_observation,population",
"primed_genesis_gwas.pheno_id": "sample_id",
"primed_genesis_gwas.age_column": "age_at_observation",
"primed_genesis_gwas.results_prefix": "LDL",
"primed_genesis_gwas.genome_build": "hg19",
"primed_genesis_gwas.workspace_name": "PRIMED_example_genotype_1000G",
"primed_genesis_gwas.workspace_namespace": "primed-cc",
"primed_genesis_gwas.prepare_gsr_data_model.consent_code": "NRES",
"primed_genesis_gwas.prepare_gsr_data_model.contributor_contact": "myemail@example.com",
"primed_genesis_gwas.prepare_gsr_data_model.genotyping_technology": "WGS",
"primed_genesis_gwas.prepare_gsr_data_model.genotyping_platform": "Illumina",
"primed_genesis_gwas.prepare_gsr_data_model.is_imputed": false,
"primed_genesis_gwas.prepare_gsr_data_model.cohorts": "1000G",
"primed_genesis_gwas.prepare_gsr_data_model.population_descriptor": "superpopulation",
"primed_genesis_gwas.prepare_gsr_data_model.population_labels": "AFR,AMR,EAS,EUR,SAS",
"primed_genesis_gwas.prepare_gsr_data_model.population_proportions": "0.26,0.14,0.2,0.2,0.2",
"primed_genesis_gwas.prepare_gsr_data_model.countries_of_recruitment": "Bangladesh,Barbados,China,Columbia,Finland,Gambia,Italy,Japan,Kenya,Nigeria,Pakistan,Peru,Sierra Leone,Spain,UK,USA,Vietnam"
}