Google Colab Notebook v0.10 may be outdated? #229
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Hello, I have been using DECODE for the last year or so and it has always worked smoothly in Google Colab. Most recently, however, I came across an error when running the actual "start the training" cell. I'm no pro in Python, but I'm gathering that maybe the numpy library has been updated to where some elements of the original code no longer work as intended. Does the code need to be updated, and if so, could you please provide an updated code or just the changes that need to be made? I would like to use DECODE soon to process some data so any help will be much appreciated! Thanks,
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Replies: 1 comment 5 replies
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Dear @Abdullah12Husain thanks for reporting, indeed it is a frequent issue with google colab, cause its hard to pin dependencies there. I will take a look. |
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@Haydnspass thank you very much! I look forward to using DECODE again. |
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Hello @Haydnspass. I wanted to follow up on this discussion post. Any update on when the Colab notebooks might be updated? Thanks! |
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Dear @Abdullah12Husain unfortunately I have to write and finish my PhD thesis at the moment :/ |
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Hello @Abdullah12Husain, I updated the notebooks and the issue should now be resolved. The changes are only in the Steps 0 and 0b of the Training and Fitting notebooks, so you might want to simply copy those 2 steps over to your own notebooks. Please note (as commented in the notebooks) that you will now be asked via popup to restart the session after running step 0, make sure to do that. Please let me know if this resolves your issue, or if you still have any problems. |
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Awesome. Thank you so much! I tried a quick test using my own edited notebooks and it seems to be working! |
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Hello @Abdullah12Husain, I updated the notebooks and the issue should now be resolved. The changes are only in the Steps 0 and 0b of the Training and Fitting notebooks, so you might want to simply copy those 2 steps over to your own notebooks. Please note (as commented in the notebooks) that you will now be asked via popup to restart the session after running step 0, make sure to do that. Please let me know if this resolves your issue, or if you still have any problems.