.ci_deploy.sh

#!/bin/bash
if [ $OS_NAME == 'macos-latest' ]; then
  # only deploy builds for a release_<sematic-version>_RC?? tag to testpypi
  if [ -z $GITHUB_REF ]; then
    echo 'No GITHUB_REF, exit'
    exit 0
  fi
  TAG=$(echo $GITHUB_REF | cut -f3 -d/)
  TAG1=$(echo $TAG | cut -f1 -d_)
  TAG2=$(echo $TAG | cut -f2 -d_)
  TAG3=$(echo $TAG | cut -f3 -d_)
  echo "GITHUB_REF: ${GITHUB_REF}, TAG: ${TAG}, TAG1: ${TAG1}, TAG2: ${TAG2}, TAG3: ${TAG3}"
  if [ -z $TAG2 ]; then
    echo 'No TAG2, exit'
    exit 0;
  fi
  if [ $TAG1 != 'release' ] || [ $TAG2 != $(cat VERSION) ]; then
    echo 'No release tag or wrong version, exit'
    exit 0;
  fi
  
  # do not deploy on linux outside of manylinux
  if [ -z $DOCKER_IMAGE ] && [ $OS_NAME != 'macos-latest' ]; then
    echo 'Not inside manylinux docker image and not OSX, exit'
    exit 0
  fi
  
  # deploy onto pypitest unless you have no RC
  if [ -z $TAG3 ]; then
    TWINE_PASSWORD=${TWINE_PASSWORD_PYPI}
    TWINE_REPOSITORY='https://upload.pypi.org/legacy/'
    echo 'Deploying to production pypi'
  elif [ ${TAG3:0:2} == 'RC' ]; then
    TWINE_PASSWORD=${TWINE_PASSWORD_TESTPYPI}
    TWINE_REPOSITORY='https://test.pypi.org/legacy/'
    echo 'Deploying to testpypi'
  else
    echo "Tag not recognized: $GITHUB_REF"
    exit 1
  fi
   
  echo "Deploying for OSX"
  # Prepare to exit upon failure
  set -e  

  # Only deploy on 10.14 to ensure 10.9+ compatibility and Mojave header/linker changes
  # NOTE: try deploying on 11.6.5 and see if it works
  osx_version=$(sw_vers -productVersion)
  echo "OSX version: $osx_version"
  osx_ver1=$(echo $osx_version | cut -d. -f1)
  osx_ver2=$(echo $osx_version | cut -d. -f2)
  if [ $osx_ver1 -lt 11 ] || [ $osx_ver2 -lt 6 ]; then
   echo "OSX version not for deployment (<11.6): $osx_version"
    exit 1
  fi

  HTSEQ_VERSION=$(cat VERSION)
  echo "TWINE_REPOSITORY=$TWINE_REPOSITORY"
  echo "TWINE_USERNAME=$TWINE_USERNAME"
  echo "TWINE_PASSWORD=$TWINE_PASSWORD"
  export PATH="$HOME/miniconda/bin:$PATH"
  source $HOME/miniconda/bin/activate
  conda activate ci

  # make wheel
  mkdir wheelhouse
  pip wheel . -w wheelhouse/
  if [ $? != 0 ]; then
      exit 1
  fi

  echo "Contents of wheelhouse:"
  ls wheelhouse

  echo "Figure out architecture string for wheel..."
  PYVER=$(echo $CONDA_PY | sed 's/\.//')
  PYARCH=cp${PYVER}-cp${PYVER}
  TWINE_WHEEL=$(ls wheelhouse/HTSeq-${HTSEQ_VERSION}-${PYARCH}*.whl)
  echo "TWINE_WHEEL=$TWINE_WHEEL"

  echo "Install twine for upload..."
  pip --version
  pip install twine

  echo "Uploading..."
  twine upload  --repository-url "${TWINE_REPOSITORY}" -u "${TWINE_USERNAME}" -p "${TWINE_PASSWORD}" "${TWINE_WHEEL}"
  if [ $? != 0 ]; then
    echo "Upload of wheel failed" 
    exit 1
  fi
  echo "Upload of wheel complete"

else
  echo "No DOCKER_IMAGE and not OSX, we should not be here!"
  exit 1
fi