From 5f8ed2c6fafc5f2959e2295bd12375ce4419945c Mon Sep 17 00:00:00 2001
From: Pablo Riesgo Ferreiro <priesgoferreiro@gmail.com>
Date: Sun, 12 Dec 2021 09:20:00 +0100
Subject: [PATCH] ficx issue with --truth-sensitivity_filter_level parameeter
 in ApplyVQSR

---
 modules/02_vqsr.nf | 2 +-
 nextflow.config    | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/modules/02_vqsr.nf b/modules/02_vqsr.nf
index e93ccca..e8fc40f 100644
--- a/modules/02_vqsr.nf
+++ b/modules/02_vqsr.nf
@@ -80,7 +80,7 @@ process VQSR {
    --reference ${params.reference} \
    --variant ${vcf} \
    --output ${name}.hc.vcf \
-   --ts_filter_level 99.0 \
+   --truth-sensitivity_filter_level 99.0 \
    --tranches-file ${tranches_file} \
    --recal-file ${recalibration_file} \
    --mode BOTH
diff --git a/nextflow.config b/nextflow.config
index 59c4112..561734f 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -33,7 +33,7 @@ env {
 // Capture exit codes from upstream processes when piping
 process.shell = ['/bin/bash', '-euo', 'pipefail']
 
-VERSION = '0.1.1'
+VERSION = '0.1.2'
 DOI = 'bla'
 
 manifest {