Fix markdown formatting

README.md

@@ -13,17 +13,17 @@ MNase-Seq or DNase-Seq experiments.
 
 # Output data
 
- [x] DNA fragment length histogram, evaluates effectiveness of digestion
- [ ] Nucleosome occupancy map (simply coverage pileup for specific fragment range)
- [x] Nucleosome absolute positioning map (using nucleosome _centers_ rather than 
+ - [x] DNA fragment length histogram, evaluates effectiveness of digestion
+ - [ ] Nucleosome occupancy map (simply coverage pileup for specific fragment range)
+ - [x] Nucleosome absolute positioning map (using nucleosome _centers_ rather than 
    read starts)
-   [ ] With the high-accuracy procedure of Cole (2012)
-   [x] With broader fragment range
-   [x] Smoothed positioning map
-   [ ] Occupancy map (smoothing with uniform kernel and width 73)
- [ ] Nucleosome conditional positioning map (like Kaplan 2010)
- [x] Nucleosome global phaseogram (using nucleosome _centers_ vs read starts)
- [x] Nucleosome localization measure map (using procedure of Zhang et al.)
- [ ] Nucleosome calls (using iterative procedure of Kaplan et al 2010)
- [x] Nucleosome feature-specific phaseogram (e.g. relative to TSS)
- [ ] Well positioned nucleosome array calls (using FFT procedure)
+   - [ ] With the high-accuracy procedure of Cole (2012)
+   - [x] With broader fragment range
+   - [x] Smoothed positioning map
+   - [ ] Occupancy map (smoothing with uniform kernel and width 73)
+ - [ ] Nucleosome conditional positioning map (like Kaplan 2010)
+ - [x] Nucleosome global phaseogram (using nucleosome _centers_ vs read starts)
+ - [x] Nucleosome localization measure map (using procedure of Zhang et al.)
+ - [ ] Nucleosome calls (using iterative procedure of Kaplan et al 2010)
+ - [x] Nucleosome feature-specific phaseogram (e.g. relative to TSS)
+ - [ ] Well positioned nucleosome array calls (using FFT procedure)