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small RNA read library data analysis

Snakemake workflow to process small RNA read libraries for Loxodes magnus; read libraries and local file paths are listed in workflow/config.yaml, these should be updated if workflow is run elsewhere.

Related datasets

[To be updated]

Running workflow

Snakemake rules and config files are in the workflow/ subfolder.

To run on a local server, use ./run_snakemake.sh script, and add rule names and additional parameters, e.g. ./run_snakemake.sh --dryrun.