obsData.h

#ifndef OBSDATA_H
#define OBSDATA_H

#include <vector>
#include <string>
#include <cstdlib>
#include <iostream>
#include <sstream>
#include <fstream>

using namespace std ;


class obsSite
{
        friend std::istream& operator >>(std::istream&, obsSite&);

	public:
                obsSite() ;
		
		string getChr(void)			{return mChr;};
		long getLocation(void)			{return mLocation;};
		int getCoverage(void)			{return mCoverage;};
		int getDerived(void)			{return mDerived;};
		char getClint(void)			{return mClint;};
		char getUlindi(void)			{return mUlindi;};
		double getDist(void)			{return mDist;};
		double getDistBin(void);
		
		void setChr(string value)		{mChr = value;};
		void setLocation(long value)		{mLocation = value;};
		void setCoverage(int value)		{mCoverage = value;};
		void setDerived(int value)		{mDerived = value;};
		void setClint(char value)		{mClint = value;};
		void setUlindi(char value)		{mUlindi = value;};
		void setDist(double value)		{mDist = value;};
		
		string print(void);

	private:
		string mChr ;
		long mLocation ;
		int mCoverage ;
		int mDerived ;
		char mClint ;
		char mUlindi ;
		double mDist ;
} ;

class obsSequence
{
    public:
        obsSequence();
        char loadSequence(const char* fileName);

        int size(void);
        obsSite at(int i);

    protected:
        vector<obsSite> mSequence;
};


#endif