Head on the Biocondutor website for documentations and install instruction!
https://bioconductor.org/packages/CNVgears/
CNVgears is an R package that implement a framework to integrate and analyze CNVs calling/segmentation results from multiple pipeline/algorithms and data type (SNPs array and NGS). It is particularly suited for studies of family based cohorts.
We provide functions to standardize several step of CNVs calling results analysis, including:
- Different methods/programs/pipelines results integration/merging;
- CNVs filtering;
- CNVs inheritance pattern detection;
- Copy Number Variable Regions (CNVRs) creation;
- Putative de novo calls visual confirmation;
- Basic CNVs annotation;
- Precessed data export in standard formats.
To install the latest version from R:
devtools::install_github("sinomem/cnvgears")