From b41ba51f57243edde4236b569449bb5a693354a9 Mon Sep 17 00:00:00 2001 From: thomasyu888 Date: Fri, 2 Jun 2023 19:51:38 -0700 Subject: [PATCH] Update documentation --- docs/build/html/Table.html | 6 +++--- docs/build/html/searchindex.js | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/docs/build/html/Table.html b/docs/build/html/Table.html index 24d8c204e..6427bb67c 100644 --- a/docs/build/html/Table.html +++ b/docs/build/html/Table.html @@ -228,14 +228,14 @@

Table attached files# upload album covers for row in data: - file_handle = syn.uploadSynapseManagedFileHandle(os.path.join(covers_dir, row[4])) + file_handle = syn.uploadFileHandle(os.path.join(covers_dir, row[4]), parent=project) row[4] = file_handle['id'] # store the table data -row_reference_set = syn.store(RowSet(columns=cols, schema=schema, rows=[Row(r) for r in data])) +row_reference_set = syn.store(RowSet(schema=schema, rows=[Row(r) for r in data])) # Later, we'll want to query the table and download our album covers -results = syn.tableQuery("select artist, album, 'year', catalog, cover from %s where artist = 'Sonny Rollins'" % schema.id) +results = syn.tableQuery(f"select artist, album, cover from {schema.id} where artist = 'Sonny Rollins'") cover_files = syn.downloadTableColumns(results, ['cover']) diff --git a/docs/build/html/searchindex.js b/docs/build/html/searchindex.js index 746d5a7ba..cd0e16ac5 100644 --- a/docs/build/html/searchindex.js +++ b/docs/build/html/searchindex.js @@ -1 +1 @@ -Search.setIndex({docnames:["Activity","Annotations","Client","CommandLineClient","Credentials","Entity","Evaluation","Multipart_upload","S3Storage","Table","Team","Upload","Utilities","Versions","Views","Wiki","index","news","reticulate","sftp","synapseutils"],envversion:{"sphinx.domains.c":2,"sphinx.domains.changeset":1,"sphinx.domains.citation":1,"sphinx.domains.cpp":5,"sphinx.domains.index":1,"sphinx.domains.javascript":2,"sphinx.domains.math":2,"sphinx.domains.python":3,"sphinx.domains.rst":2,"sphinx.domains.std":2,sphinx:56},filenames:["Activity.rst","Annotations.rst","Client.rst","CommandLineClient.rst","Credentials.rst","Entity.rst","Evaluation.rst","Multipart_upload.rst","S3Storage.rst","Table.rst","Team.rst","Upload.rst","Utilities.rst","Versions.rst","Views.rst","Wiki.rst","index.rst","news.rst","reticulate.rst","sftp.rst","synapseutils.rst"],objects:{"":[[16,0,0,"-","synapseclient"],[20,0,0,"-","synapseutils"]],"synapseclient.Activity":[[16,2,1,"","executed"],[16,2,1,"","used"]],"synapseclient.Dataset":[[16,2,1,"","add_folder"],[16,2,1,"","add_folders"],[16,2,1,"","add_item"],[16,2,1,"","add_items"],[16,2,1,"","has_item"],[16,2,1,"","remove_item"]],"synapseclient.Entity":[[16,2,1,"","create"],[16,2,1,"","has_key"],[16,2,1,"","keys"],[16,2,1,"","local_state"]],"synapseclient.EntityViewSchema":[[16,2,1,"","set_entity_types"]],"synapseclient.PartialRowset":[[16,2,1,"","from_mapping"]],"synapseclient.SubmissionStatus":[[16,2,1,"","json"]],"synapseclient.Synapse":[[16,2,1,"","clear_download_list"],[16,2,1,"","createColumns"],[16,2,1,"","createStorageLocationSetting"],[16,2,1,"","create_external_s3_file_handle"],[16,2,1,"","create_s3_storage_location"],[16,2,1,"","create_snapshot_version"],[16,2,1,"","delete"],[16,2,1,"","deleteProvenance"],[16,2,1,"","downloadTableColumns"],[16,2,1,"","findEntityId"],[16,2,1,"","get"],[16,2,1,"","getAnnotations"],[16,2,1,"","getChildren"],[16,2,1,"","getColumn"],[16,2,1,"","getColumns"],[16,2,1,"","getConfigFile"],[16,2,1,"","getEvaluation"],[16,2,1,"","getEvaluationByContentSource"],[16,2,1,"","getEvaluationByName"],[16,2,1,"","getMyStorageLocationSetting"],[16,2,1,"","getPermissions"],[16,2,1,"","getProjectSetting"],[16,2,1,"","getProvenance"],[16,2,1,"","getSubmission"],[16,2,1,"","getSubmissionBundles"],[16,2,1,"","getSubmissionStatus"],[16,2,1,"","getSubmissions"],[16,2,1,"","getTableColumns"],[16,2,1,"","getTeam"],[16,2,1,"","getTeamMembers"],[16,2,1,"","getUserProfile"],[16,2,1,"","getWiki"],[16,2,1,"","getWikiAttachments"],[16,2,1,"","getWikiHeaders"],[16,2,1,"","get_annotations"],[16,2,1,"","get_download_list"],[16,2,1,"","get_download_list_manifest"],[16,2,1,"","get_membership_status"],[16,2,1,"","get_sts_storage_token"],[16,2,1,"","get_team_open_invitations"],[16,2,1,"","invalidateAPIKey"],[16,2,1,"","invite_to_team"],[16,2,1,"","is_certified"],[16,2,1,"","login"],[16,2,1,"","logout"],[16,2,1,"","md5Query"],[16,2,1,"","move"],[16,2,1,"","onweb"],[16,2,1,"","printEntity"],[16,2,1,"","remove_from_download_list"],[16,2,1,"","restDELETE"],[16,2,1,"","restGET"],[16,2,1,"","restPOST"],[16,2,1,"","restPUT"],[16,2,1,"","sendMessage"],[16,2,1,"","send_membership_invitation"],[16,2,1,"","setAnnotations"],[16,2,1,"","setEndpoints"],[16,2,1,"","setPermissions"],[16,2,1,"","setProvenance"],[16,2,1,"","setStorageLocation"],[16,2,1,"","set_annotations"],[16,2,1,"","store"],[16,2,1,"","submit"],[16,2,1,"","tableQuery"],[16,2,1,"","updateActivity"],[16,2,1,"","uploadFileHandle"]],"synapseclient.Wiki":[[16,2,1,"","deleteURI"],[16,2,1,"","getURI"],[16,2,1,"","json"],[16,2,1,"","postURI"],[16,2,1,"","putURI"],[16,2,1,"","update_markdown"]],"synapseclient.activity":[[0,1,1,"","Activity"]],"synapseclient.activity.Activity":[[0,2,1,"","executed"],[0,2,1,"","used"]],"synapseclient.annotations":[[1,1,1,"","Annotations"]],"synapseclient.annotations.Annotations":[[1,2,1,"","__init__"]],"synapseclient.client":[[2,2,1,"","login"]],"synapseclient.core":[[12,0,0,"-","utils"],[13,0,0,"-","version_check"]],"synapseclient.core.upload":[[7,0,0,"-","multipart_upload"]],"synapseclient.core.upload.multipart_upload":[[7,3,1,"","_multipart_upload"],[7,3,1,"","multipart_upload_file"],[7,3,1,"","multipart_upload_string"],[7,3,1,"","shared_executor"]],"synapseclient.core.utils":[[12,3,1,"","as_url"],[12,3,1,"","caller_module_name"],[12,3,1,"","concrete_type_of"],[12,1,1,"","deprecated_keyword_param"],[12,3,1,"","download_file"],[12,3,1,"","equal_paths"],[12,3,1,"","extract_filename"],[12,3,1,"","extract_prefix"],[12,3,1,"","extract_synapse_id_from_query"],[12,3,1,"","extract_user_name"],[12,3,1,"","extract_zip_file_to_directory"],[12,3,1,"","file_url_to_path"],[12,3,1,"","find_data_file_handle"],[12,3,1,"","format_time_interval"],[12,3,1,"","from_unix_epoch_time"],[12,3,1,"","from_unix_epoch_time_secs"],[12,3,1,"","get_properties"],[12,3,1,"","guess_file_name"],[12,3,1,"","id_of"],[12,3,1,"","is_base64_encoded"],[12,3,1,"","is_date"],[12,3,1,"","is_in_path"],[12,3,1,"","is_json"],[12,3,1,"","is_same_base_url"],[12,3,1,"","is_synapse_id"],[12,3,1,"","is_url"],[12,3,1,"","itersubclasses"],[12,3,1,"","make_bogus_binary_file"],[12,3,1,"","make_bogus_data_file"],[12,3,1,"","md5_for_file"],[12,3,1,"","normalize_path"],[12,3,1,"","normalize_whitespace"],[12,3,1,"","printTransferProgress"],[12,3,1,"","query_limit_and_offset"],[12,3,1,"","snake_case"],[12,3,1,"","threadsafe_generator"],[12,1,1,"","threadsafe_iter"],[12,3,1,"","to_list"],[12,3,1,"","to_unix_epoch_time"],[12,3,1,"","to_unix_epoch_time_secs"],[12,3,1,"","topolgical_sort"],[12,3,1,"","touch"],[12,3,1,"","unique_filename"]],"synapseclient.core.version_check":[[13,2,1,"","check_for_updates"],[13,2,1,"","release_notes"]],"synapseclient.entity":[[5,1,1,"","DockerRepository"],[5,1,1,"","Entity"],[5,1,1,"","File"],[5,1,1,"","Folder"],[5,1,1,"","Link"],[5,1,1,"","Project"]],"synapseclient.evaluation":[[6,1,1,"","Evaluation"],[6,1,1,"","Submission"],[6,1,1,"","SubmissionStatus"]],"synapseclient.evaluation.Evaluation":[[6,2,1,"","__init__"]],"synapseclient.evaluation.Submission":[[6,2,1,"","__init__"]],"synapseclient.evaluation.SubmissionStatus":[[6,2,1,"","__init__"]],"synapseclient.table":[[9,1,1,"","Column"],[9,1,1,"","CsvFileTable"],[5,1,1,"","EntityViewSchema"],[9,1,1,"","Row"],[9,1,1,"","RowSet"],[9,1,1,"","RowSetTable"],[5,1,1,"","Schema"],[9,3,1,"","Table"],[9,1,1,"","TableAbstractBaseClass"],[9,1,1,"","TableQueryResult"],[9,3,1,"","as_table_columns"],[9,3,1,"","build_table"]],"synapseclient.table.Column":[[9,2,1,"","__init__"]],"synapseclient.table.CsvFileTable":[[9,2,1,"","asDataFrame"],[9,2,1,"","from_table_query"],[9,2,1,"","iter_row_metadata"],[9,2,1,"","setColumnHeaders"]],"synapseclient.table.Row":[[9,2,1,"","__init__"]],"synapseclient.table.RowSet":[[9,2,1,"","__init__"]],"synapseclient.table.RowSetTable":[[9,2,1,"","iter_row_metadata"]],"synapseclient.table.TableAbstractBaseClass":[[9,1,1,"","RowMetadataTuple"],[9,2,1,"","iter_row_metadata"]],"synapseclient.table.TableAbstractBaseClass.RowMetadataTuple":[[9,4,1,"","row_etag"],[9,4,1,"","row_id"],[9,4,1,"","row_version"]],"synapseclient.table.TableQueryResult":[[9,2,1,"","asDataFrame"],[9,2,1,"","iter_row_metadata"],[9,2,1,"","next"]],"synapseclient.team":[[10,1,1,"","Team"],[10,1,1,"","TeamMember"],[10,1,1,"","UserGroupHeader"],[10,1,1,"","UserProfile"]],"synapseclient.wiki":[[15,1,1,"","Wiki"]],"synapseclient.wiki.Wiki":[[15,2,1,"","__init__"]],"synapseutils.copy_functions":[[20,3,1,"","changeFileMetaData"],[20,3,1,"","copy"],[20,3,1,"","copyFileHandles"],[20,3,1,"","copyWiki"]],"synapseutils.describe_functions":[[20,3,1,"","describe"]],"synapseutils.migrate_functions":[[20,1,1,"","MigrationResult"],[20,3,1,"","index_files_for_migration"],[20,3,1,"","migrate_indexed_files"]],"synapseutils.migrate_functions.MigrationResult":[[20,2,1,"","as_csv"],[20,2,1,"","get_counts_by_status"],[20,2,1,"","get_migrations"]],"synapseutils.monitor":[[20,3,1,"","notifyMe"],[20,3,1,"","with_progress_bar"]],"synapseutils.sync":[[20,3,1,"","generateManifest"],[20,3,1,"","generate_sync_manifest"],[20,3,1,"","readManifestFile"],[20,3,1,"","syncFromSynapse"],[20,3,1,"","syncToSynapse"]],"synapseutils.walk_functions":[[20,3,1,"","walk"]],synapseclient:[[16,1,1,"","Activity"],[16,1,1,"","Annotations"],[16,1,1,"","Column"],[16,1,1,"","Dataset"],[16,1,1,"","DockerRepository"],[16,1,1,"","Entity"],[16,1,1,"","EntityViewSchema"],[16,1,1,"","EntityViewType"],[16,1,1,"","Evaluation"],[16,1,1,"","File"],[16,1,1,"","Folder"],[16,1,1,"","Link"],[16,1,1,"","MaterializedViewSchema"],[16,1,1,"","PartialRowset"],[16,1,1,"","Project"],[16,1,1,"","Row"],[16,1,1,"","RowSet"],[16,1,1,"","Schema"],[16,1,1,"","Submission"],[16,1,1,"","SubmissionStatus"],[16,1,1,"","SubmissionViewSchema"],[16,1,1,"","Synapse"],[16,3,1,"","Table"],[16,1,1,"","Team"],[16,1,1,"","TeamMember"],[16,1,1,"","UserGroupHeader"],[16,1,1,"","UserProfile"],[16,1,1,"","Wiki"],[0,0,0,"-","activity"],[1,0,0,"-","annotations"],[16,3,1,"","as_table_columns"],[16,3,1,"","build_table"],[16,3,1,"","check_for_updates"],[2,0,0,"-","client"],[5,0,0,"-","entity"],[6,0,0,"-","evaluation"],[16,3,1,"","login"],[16,3,1,"","release_notes"],[9,0,0,"-","table"],[10,0,0,"-","team"],[15,0,0,"-","wiki"]],synapseutils:[[20,0,0,"-","copy_functions"],[20,0,0,"-","describe_functions"],[20,0,0,"-","migrate_functions"],[20,0,0,"-","monitor"],[20,0,0,"-","sync"],[20,0,0,"-","walk_functions"]]},objnames:{"0":["py","module","Python module"],"1":["py","class","Python class"],"2":["py","method","Python method"],"3":["py","function","Python function"],"4":["py","attribute","Python attribute"]},objtypes:{"0":"py:module","1":"py:class","2":"py:method","3":"py:function","4":"py:attribute"},terms:{"0":[2,6,8,9,12,18,20],"00":18,"000":18,"01":[16,18],"02":[16,18],"024":18,"03":[16,18],"04":[12,16,18],"05":16,"06":[12,16],"07":16,"08":16,"09":16,"0x400":17,"1":[0,2,3,6,9,11,12,16,18,20],"10":[7,16,18],"100":[2,9,12,16],"1000":[8,9,12,16],"1005":17,"100kb":8,"1013":17,"1018":17,"1021":17,"1024":17,"1027":17,"1031":17,"1032":17,"1033":17,"1036":17,"1039":17,"1041":17,"1048576":12,"1049":17,"1053":17,"1056":17,"1058":17,"1059":17,"1063":17,"1068":17,"1070":17,"1072":17,"1073":17,"1074":17,"1075":17,"1076":17,"1078":17,"1080":17,"1082":17,"1084":17,"1085":17,"1087":17,"1088":17,"1090":17,"1096":17,"1097":17,"1099":17,"11":[16,18],"1102":17,"1103":17,"1104":17,"1109":17,"1110":17,"1111":17,"1112":17,"1113":17,"1114":17,"1118":17,"1119":17,"1120":17,"1123":17,"1125":17,"1128":17,"1129":17,"1130":17,"1134":17,"1135":17,"1136":17,"1138":17,"1141":17,"1143":17,"1145":17,"1146":17,"1150":17,"1156":17,"1158":17,"1159":17,"1161":17,"1163":17,"1165":17,"1167":17,"1169":17,"1172":17,"1173":17,"1174":17,"1175":17,"1176":17,"1184":17,"1188":17,"1189":17,"1193":17,"1196":17,"1197":17,"11ea":1,"12":[16,18],"1204":17,"1205":17,"1207":17,"1209":17,"1212":17,"1219":17,"122":1,"1221":17,"1224":17,"1226":17,"123":[2,16,20],"1234":[1,20],"12345":[8,9,18],"1234567":[2,16],"1235":17,"1237":17,"12600":9,"126000":18,"1267":17,"1268":17,"13":[16,18],"1415":20,"142":17,"14g":17,"15":16,"154":17,"1543":9,"1558":9,"1577":9,"16":16,"167":17,"168":17,"17":16,"1732":18,"1743":18,"179":17,"18":16,"180":17,"1809":18,"187":17,"19":16,"190":17,"1901877":[6,16],"195":17,"1956":9,"1957":9,"1958":9,"1970":12,"198":17,"2":[0,2,8,9,11,12,16,18,20],"20":[2,9,16,18],"20000":9,"20001":[9,18],"2005090":[2,16],"201001":9,"2012":12,"2016":16,"2017":16,"2018":16,"2019":16,"2020":16,"20200":[9,18],"202001":9,"2021":16,"2022":16,"2023":16,"203001":9,"204001":9,"2097152":12,"21":8,"22":18,"224":17,"226":17,"23":[16,18],"235":17,"253":17,"261":17,"267":17,"270":17,"271":17,"272":17,"274":17,"28":16,"29":16,"297":17,"2mb":17,"3":[2,9,18,20],"300":[2,16],"30033":[9,18],"301":17,"304":17,"308":17,"309":17,"30999":[9,18],"31":16,"315":17,"32":18,"331":17,"332154":1,"337":17,"343":17,"34345":20,"344":17,"346":17,"347":17,"349":17,"350":17,"351":17,"352":17,"353":17,"356":17,"357":17,"358":17,"360":17,"361":17,"362":17,"363":17,"366":17,"37":12,"370":17,"371":17,"380":17,"381":17,"382":17,"383":17,"384":17,"387":17,"388":17,"389":17,"390":17,"391":17,"393":17,"396":17,"397":17,"399":17,"4":[3,9,16,20],"400":17,"4001":9,"402":17,"40256475":1,"403":17,"404":17,"40444":[9,18],"407":17,"408":17,"409":17,"41000":9,"412":17,"413":17,"41444":[9,18],"415":17,"416":17,"418":17,"419":17,"421":17,"422":17,"423":17,"424":17,"425":17,"426":17,"427":17,"428":17,"429":17,"431":17,"435":17,"437":17,"438":17,"442":17,"443":17,"450":17,"451":17,"454":17,"456":[17,18],"461":17,"463":17,"464":17,"465":17,"468":17,"46e4":[2,16],"47":1,"470":17,"471":17,"472":17,"473":17,"475":17,"48":17,"482":17,"483":17,"484":17,"486":17,"487":17,"488":17,"489":17,"491":17,"494":17,"49508":20,"496":17,"4962559f090f":[2,16],"499":17,"5":[2,11,12,16,20],"50":[9,16,17],"500":17,"504":17,"506":17,"508":17,"511":17,"512":17,"51234":[9,18],"515":17,"516":17,"517":17,"518":17,"519":17,"521":17,"525":17,"526":17,"53":17,"535":17,"536":17,"537":17,"539":17,"54":17,"54321":8,"545":17,"54567":[9,18],"546":17,"555":17,"558":17,"562":17,"566":17,"569":17,"572":17,"573":17,"576949":12,"577":17,"578":17,"581":17,"582":17,"583":17,"590":17,"594":17,"595":17,"597":17,"5mb":7,"6":[16,18],"600":[2,16],"603":17,"605":17,"608":17,"612":17,"61234":[9,18],"617":17,"627477":1,"63":17,"638":17,"646":17,"647":17,"654":17,"658":17,"66":15,"669":17,"673":17,"680":17,"682":17,"683":17,"68686":[9,18],"688":17,"689":17,"692":17,"693":17,"694":17,"6fb3":1,"7":16,"706":17,"71":20,"726":17,"728":17,"729":17,"735":17,"743":17,"744":17,"750":17,"758":17,"759":17,"760":17,"766":17,"770":17,"772":17,"776":17,"777":17,"783":17,"788":17,"790":17,"795":17,"796":17,"797":17,"798":17,"799":17,"7bdb83e9":[2,16],"8":[5,16],"802":17,"804":17,"805":17,"806":17,"807":17,"810":17,"812":17,"814":17,"815":17,"819":17,"822":17,"823":17,"824":17,"829":17,"840":17,"846":17,"847":17,"848":17,"849":17,"851":17,"852":17,"855":17,"856":17,"858":17,"860":17,"863":17,"864":17,"866":17,"870":17,"873":17,"881":17,"885":17,"888":17,"89":17,"9":[1,16,18],"907":17,"909":17,"910":17,"913":17,"916":17,"917":17,"919":17,"920":17,"926":17,"927":17,"929":17,"948":17,"959":17,"960":17,"9614543":16,"962":17,"972":17,"974":17,"98765":8,"9876543":17,"987a":[2,16],"989":17,"99":6,"992":17,"993":17,"997":17,"999":17,"9cb6d0d8d984":1,"abstract":9,"boolean":[9,12,16,17,20],"break":[11,17],"byte":[7,12,17,20],"case":[0,2,5,8,9,12,16,17,18,20],"class":[0,2,5,6,9,10,12,14,16,17,18,20],"default":[2,3,5,8,9,11,12,13,16,17,20],"do":[1,3,4,5,8,9,16,17],"export":[2,4,8,16],"final":[2,6,16],"float":[12,16],"function":[2,4,5,7,8,9,16,17,18,20],"import":[1,2,4,5,6,8,9,11,14,15,17,18,20],"int":[1,2,3,7,12,16,17],"long":[3,16,17,20],"new":[2,3,5,8,9,12,14,16,20],"null":18,"public":[2,16,17,18],"return":[2,3,5,6,7,8,9,12,16,17,18,20],"short":[0,6,10,16],"switch":[2,16,17],"throw":[12,17],"true":[0,2,3,4,5,7,8,9,10,12,14,16,17,18,20],"try":[1,2,5,7,9,12,16,17],"while":[2,8,16,17,18,20],A:[0,1,2,3,4,5,6,9,10,12,14,15,16,17,18,20],And:18,As:[5,8,17,20],At:[8,18],BE:[2,16],By:[2,11,16],For:[0,1,2,3,4,5,9,11,13,15,16,17,18,19,20],If:[0,2,3,4,5,8,9,11,12,16,17,18,20],In:[0,1,2,3,4,5,9,10,16,17,18,20],Is:16,It:[0,5,9,11,12,16,17,20],Its:16,NOT:[2,16],No:[2,3,16,17,20],Not:17,OR:[2,16],On:[2,16,17],One:[2,5,16,20],Or:[4,6,16],That:[2,16],The:[0,2,3,4,5,6,8,9,10,11,12,14,16,17,18,19,20],There:[4,8,16,17],These:[5,8,9,16,17,18,20],To:[0,2,4,5,6,8,9,11,14,16,17,18,20],WILL:[2,16],Will:[3,12],With:9,_:7,__dict__:5,__init__:[1,6,9,15,17],__name__:12,_dev_version_url:[13,16],_entity_type_to_class:17,_getrawannot:[2,16],_list:[9,16,17],_multipart_upload:7,_seen:12,_start_multipart_upload:7,_synapseutils_:17,_version_url:[13,16],a50a:[2,16],abc:[12,17],abil:[14,17],abl:[5,16,17,19],abort:17,about:[2,9,10,11,16,17,20],abov:[8,15,18,20],abraham:18,absent:[2,16],absolut:12,acceler:17,accept:[0,2,3,6,16,17,18,20],access:[1,2,3,4,5,6,8,12,17,20],access_key_id:8,accessapprov:17,accessrequir:17,accessrequirementunfulfil:17,accesstyp:[2,16,18],accident:17,accord:20,account:[2,16,17],acl:[2,6,8,16,17,18],across:[2,5,9,16],act:[0,18],action:17,activ:[2,3,11,16,17,18,20],activest:12,activitydescript:[0,2,16,20],activitynam:[0,2,16,20],actual:[5,9,12,17,20],acycl:12,ad:[1,2,3,4,5,8,9,11,16,17,18,20],adapt:12,add:[0,2,5,8,9,11,14,16,17,18,19,20],add_fold:[16,17],add_item:[16,17],addannotationcolumn:[5,9,16,17],addcolumn:9,adddefaultviewcolumn:[5,9,14,16,18],addit:[0,1,2,3,5,8,16,17,20],addition:17,address:[2,10,16,17],adjust:17,administr:[10,16],advantag:17,affili:[10,16],after:[2,5,9,12,16,17,19,20],again:[8,9],against:[8,12,17],aka:[2,16],album:9,algorithm:[0,20],alia:[3,9],align:[9,15,16],all:[2,3,5,8,9,12,14,16,17,18,20],allfil:20,allow:[2,4,6,9,14,15,16,17,18,20],along:[2,3,16,17],alreadi:[2,3,5,8,12,16,17,18,20],already_migr:20,also:[0,1,2,4,5,8,9,11,15,16,17,18,20],alter:8,altern:[0,4,8,9,13,16,17,18],alwai:[2,5,11,16,17,20],amazon:[2,16,17],amazonaw:[2,16],ambigu:5,amount:[2,16],an:[1,2,3,4,5,6,7,9,10,12,15,16,17,18,20],analys:16,analysi:[2,16,18],anandolog:12,ani:[0,2,3,4,5,6,7,8,9,11,16,17,20],anno:[2,16,17],annot1:20,annot2:20,annot:[2,6,9,17,20],anonym:17,anoth:[1,8,9,16,19],answer:[2,16],api:[2,3,8,9,17,18],apikei:[2,4,16,17],appear:[3,9,12,16,17],append:[9,12,16],appli:[0,2,8,16,17,18],applic:[2,4,5,16,18,20],appropri:[2,3,9,16,17],approv:[2,10,16],appveyor:17,apt:[2,16,19],ar:[0,1,2,3,4,5,6,7,8,9,10,11,12,13,15,16,17,18,19,20],arbitrari:[1,2,12,16],aren:[17,18],arg:[5,8,9,16,17,18],argument:[1,2,4,7,8,9,16,17,20],around:[2,12,16],arrai:[2,9,16],articl:[5,8,18],artist:9,as_csv:20,as_table_column:[9,16,17],as_url:12,asc:[2,16],ascii:[2,16],asdatafram:[9,14,16,17,18],asdf:[2,16,17],asdfasdfasdf:17,assai:11,assertionerror:17,assign:[1,16],assist:20,associ:[2,5,6,8,9,10,16,18,20],associateobjectid:20,associateobjecttyp:20,assum:[11,18],async:17,asynchron:[2,16,17],atom:[5,9,16],attach:[1,2,3,15,16,17,18,20],attempt:[2,16,20],attribut:[1,2,14,16,17],authendpoint:[2,16],authent:[2,3,4,16,17,18],author:[2,16],authtoken:[2,4,16,17],auto:17,autom:17,automat:[2,3,5,9,11,16,17,18,20],avail:[3,8,16,17,18,19],avoid:[3,5,11,18,20],aw:[2,3,8,16,17],awai:17,awesom:[0,16],aws_access_key_id:[2,8,16],aws_secret_access_kei:8,aws_session_token:8,b:[9,12,16,18],back:[2,6,8,9,12,16,17],backend:17,backoff:17,backslash:[2,16],badg:17,bah:[9,18],bam:11,bang:12,banner:[2,16],bar1:16,bar2:16,bar:[1,2,3,5,8,12,16,17,18,20],barcol:16,base64:[2,12,16],base:[2,5,9,12,14,16,17,20],base_kei:[2,8,16],basenam:[5,20],bash:[2,3,16],basi:8,bat:12,batch:[2,16,17,20],baz:[2,16,17,18,20],bb0a:1,bday_column2:9,bday_column:9,bearer:[2,16],becaus:[2,11,16,17],becom:[1,3,16,17,20],been:[2,8,12,16,17,20],befor:[2,4,8,9,12,16,17,19,20],began:12,behalf:[3,16],behavior:[11,17,20],behind:15,being:[2,5,8,16,17,20],belong:[2,5,9,12,15,16],below:[17,20],benefactor:[2,16],best:1,better:[15,17],bettter:17,between:[2,5,16,17,18,20],binari:[12,16,19],bionetwork:[0,16],birthdai:[9,18],birthday2:9,bit:9,black:17,blank:17,block_siz:12,blog:12,blp:9,blue:[2,9,16],bnk:[9,18],board:[2,16],bodi:[2,16],bogu:12,bool:[2,7,12,16,17,20],both:[0,1,2,5,12,13,16,20],boto3:17,boto:[2,3,8,16],botocor:17,branch:[16,17,18],broken:17,browsabl:16,browser:[2,16],bucket:[2,8,16,17],bucket_nam:[2,8,16],bugfix:17,build:[0,2,3,6,9,12,16,17,18,19],build_tabl:[9,16,17,18],built:[16,19],builtin:17,bulk:[2,14,16,17],bulkfiledownloadrequest:17,bundl:[2,12,16,17],burrel:9,burrellwarholbn1543:9,bypass:[2,3,16,20],c:[2,3,9,12,16,18],cach:[2,3,5,16,17,20],cache_root_dir:[2,16,17],cachedir:17,cachemap:17,calcul:[2,12,16,17],call:[0,2,3,5,7,8,9,10,12,16,17,20],callback:12,caller:[2,12,16,20],caller_module_nam:12,calling_modul:12,camel:[16,17],camelcas:12,can:[0,1,2,3,4,5,6,7,8,9,10,11,14,15,16,17,18,20],cancancel:[6,16],cancel:[2,6,16],cancelrequest:[6,16],cannot:[3,15,16,17],canpublicjoin:[10,16],capabl:8,care:16,cart:[3,17],cat:17,catalog:9,caus:[11,17],cd:16,cell:[16,17],certain:[4,8,17],certif:17,certifi:[2,16],challeng:[2,3,6,16,18],chang:[2,3,6,8,10,14,16,17,18,20],change_permiss:[2,16],changefilemetadata:[5,17,20],changeset:9,charact:[2,3,9,12,16,18],character:16,charset:[5,16],check:[2,3,6,13,16,17],check_for_upd:[13,16],checkout:16,checksum:[2,16],child:17,children:[2,8,16,17],chmod:[2,16],choic:[3,5,9,15,16],choos:[2,4,16,20],chosen:[10,16],chromosom:[9,18],chunckedqueri:17,chunk:[7,17],chunkedencodingerror:17,chunkedqueri:17,chunkencodingerror:17,circumst:8,cl:12,clarifi:[17,20],classmethod:[9,16,17],claus:16,clean:[12,17],cleanup:17,clear:[2,16],clear_download_list:[2,16],cli:[8,16,17],click:17,client:[1,4,5,7,8,10,11,12,13,17,18,20],clone:16,close:[2,6,16,17,18],cloud:16,cluster:[0,17,18],clustered_sampl:0,cmd:[2,3,16],code:[0,2,4,5,7,8,12,16,17,20],code_repo:[0,16],codeent:[0,16],codeql:17,col:[5,9,16,18],col_id:20,col_nam:20,collabor:[16,17],collaps:[2,16,18],collect:[1,6,9,12,17],collection_d:1,collid:5,collis:[2,5,16,20],colon:20,coltran:9,coltranebluetrain:9,column1:[12,17,20],column2:[12,17,20],column3:[17,20],column:[2,3,5,14,16,17,18,20],column_nam:16,columns_to_stor:17,columntyp:[5,9,14,16,17,18],com:[0,2,12,16],combin:[0,2,9,16],come:[2,9,16],comma:[2,12,16],command:[2,4,11,16,17,18,20],comment:[2,11,16,17],common:[0,8,12,20],commun:[2,16,19],compani:[10,16],companion:16,compar:[12,17],compat:[2,4,8,16,17,18],competit:6,compil:[2,16,17,19],complet:[1,2,3,5,6,8,12,16,17,18,20],complic:17,compon:16,compos:16,concret:[12,20],concrete_type_of:12,concretetyp:16,concurr:[7,9,10,16,17],condit:17,conduct:[8,17],config:[2,16,17],configpath:[2,3,16],configur:[2,3,4,7,8,16,17,18,20],confirm:[2,3,8,16,20],conflict:[0,2,5,9,16],confluenc:17,conform:9,confus:[5,16,17],conjunct:[2,16],connect:[2,3,17,18,20],connection2:18,consid:[2,4,16],consist:[9,17],consol:[3,16,17,18],consolid:17,constrain:[9,16],construct:[2,16,18],constructor:[1,5,10,16,17,20],contact:[2,16,17],contain:[0,2,3,5,8,9,10,12,15,16,17,18,20],content:[2,3,5,6,8,9,12,14,15,16,17,20],content_disposition_head:12,content_typ:[7,12],contentsourc:[6,16,18],contenttyp:[2,5,7,16,17,20],context:[6,7],continu:[3,9,20],continue_on_error:[3,8,20],contribut:[2,16,17],contributor:[14,18],control:[2,3,5,6,8,10,18],conveni:[2,16,17],convert:[9,12,16,17,18,20],convert_to_datetim:[9,17],copi:[1,3,5,8,16,17],copy_funct:[5,20],copyfilehandl:[17,20],copywiki:[17,20],core:[7,12],correct:17,correctli:17,correspond:[2,9,16],cosmet:[16,17],could:[6,20],couldn:17,count:[17,20],cover:[5,9],cover_fil:9,covers_dir:9,cp:8,cpu:17,crawl:20,creat:[1,2,5,6,9,11,12,16,17,18,20],create_external_s3_file_handl:[2,8,16],create_s3_storage_loc:[2,8,16],create_snapshot_vers:[2,16,17],create_table_snapshot:[8,20],createcolumn:[2,16],created_on:[2,16],createdon:[5,9,16],createent:17,createorupd:[2,16],createstoragelocationset:[2,16],creation:[2,16,17,20],creationd:1,creator:[5,16],credenti:[2,3,16,17],credit:[2,16],cryptic:12,cryptographi:17,csv:[2,3,8,9,16,17,20],csv_log_path:[3,8],csvfilet:[9,16,17],csvtablefil:17,ctrl:12,current:[2,9,10,12,13,16,17,18],current_fram:12,currentfram:12,custom:[2,8,9,16,17],d:[9,12,16,18],daemon:[2,16],danger:17,dash:[16,17],data:[2,3,5,6,8,12,14,15,17,20],data_fold:16,data_r_u:[2,16],databas:[8,20],datafilehandleid:[5,8,12,16,17],datafold:18,datafram:[9,16,17,20],dataset:[2,3,16,17,20],dataset_item:[16,17],datasetitem:16,datatyp:17,date:[3,5,9,10,12,16,17,18],date_list:17,datetim:[1,9,12,17],db:[8,20],db_path:[3,8,20],dbu:[2,16],dd:18,debian:19,debug:[2,3,16,17],decor:[12,15,17,20],deem:3,deep:17,def:20,default_filenam:12,defaultvalu:[9,16],defin:[1,2,4,5,9,10,12,14,15,16,17,20],defining_sql:16,definingsql:[16,17],delay_load:18,delet:[2,15,16,17],deleteent:17,deleteproven:[2,16],deleterow:17,deleteuri:16,delimit:[12,16,20],deliv:[2,16],demonstr:14,depend:[5,9,16,17,18],deprec:[2,3,4,5,9,12,16,17],deprecated_keyword_param:12,depth:12,deriv:[2,3,12,16,17],desc:[2,16],descend:3,describ:[2,3,8,9,10,11,16,17,18],describe_funct:20,descript:[0,2,3,5,6,8,9,10,15,16,17,18,20],description_file_path:3,descriptionfil:[3,17],design:17,desir:[3,5,11,16],dest_file_nam:7,dest_storage_location_id:[3,8,20],destin:[2,3,7,8,16,17,20],destinationid:[3,20],destinationsubpageid:20,destruct:[2,16],detail:[2,3,6,9,12,16,17,18,20],detect:[2,10,12,16],determin:[2,3,9,12,16,20],dev:[2,16,17,19],develop:[0,13,16,17,19],devot:7,df:[9,16],diagnos:3,dict:[1,2,9,12,16,20],dictionari:[0,1,2,3,5,12,16,17,20],differ:[2,3,5,7,9,11,16,17,18],dir:17,direct:[2,12,16,17],directli:[0,2,7,8,10,17,18],directori:[2,3,4,8,12,16,17,20],directory_path:20,dirnam:20,dirpath:20,disciplin:[10,16],discov:[5,9,16],discuss:18,disk:[8,17,20],displai:[2,3,5,6,9,16,17],display:12,disposit:12,distinct:5,distinguish:16,distribut:[11,17,19],divis:5,doc:[2,3,5,6,9,13,16,17,20],docker:[2,5,9,14,16,17,18],docker_tag:17,dockerhub:[5,16],dockerrepo:[2,16,20],dockerrepositori:[2,16,17],dockertag:[2,16],docstr:17,document:[1,2,3,8,9,17,18],doe:[2,9,16,17,18,20],doesn:17,doing_someth:20,don:[2,3,5,16,17],done:[5,9,14,16,20],donwload:17,dot:[5,12],doubl:[2,5,9,16,17],down:[7,17],download:[0,2,5,8,9,12,16,17,18,20],download_fil:12,downloada:20,downloadent:17,downloadfil:[2,11,16,20],downloadloc:[2,3,9,16,18],downloadtablecolumn:[2,9,16,17],downloadtablefil:17,drop:17,dry:3,dryrun:[3,8,20],dt:12,dtype:[9,17,20],dtype_2_tabletyp:17,due:[16,17,18],duplic:17,dure:[0,16,17],e:[0,2,5,8,9,10,11,12,16,17,18,20],each:[0,2,3,9,16,18,20],earli:17,easi:4,easiest:16,easili:[11,14,16],ecdsa:19,echo:[2,16],ed:16,edit:[14,17,20],effect:8,eid:3,either:[0,2,4,5,8,12,16,18,19],element:[9,16],email:[2,3,10,16,17,20],emit:12,emphas:[15,18],emploi:[10,16],empti:[2,8,16,17,20],enabl:[2,4,9,16,17],encapsul:2,encod:[2,12,16,17],encount:[8,17,20],encout:17,encrypt:[2,16],end:[5,7,9,12,16,17,18],endpoint:[2,3,16,17],endpointurl:[2,16],enforc:[5,17],ensur:[8,17,18],ensure_ascii:[2,16],entail:5,enter:4,entir:[2,5,16,17,20],entiti:[1,2,3,6,8,9,10,11,12,14,15,17,20],entity_id:[2,8,16],entity_parent_id:[2,16],entityexist:3,entityid:[2,3,6,9,16,17],entityid_list:17,entitymap:20,entitysubpageid:20,entitytyp:[2,16,20],entityview:[2,16,17,20],entityviewschema:[2,5,9,14,16,17,18],entityviewtyp:[5,9,14,16,17,18],entri:[6,16],enumer:[9,16],enumvalu:[9,16],environ:[2,16,17,18],eo:18,eol:17,epoch:18,equal:[2,12,16],equal_path:12,error:[0,3,5,8,9,16,17,20],escap:[2,3,16],escapecharact:[2,9,16],etag:[1,2,6,9,10,16,17],etc:[2,5,9,12,16,20],eval:18,evalid:[3,17],evaln:3,evalu:[2,3,17],evaluation_:18,evaluation_id:17,evaluation_in_progress:[2,16],evaluationid:[3,6,16],evaluationnam:3,even:[2,5,16,17,20],eventu:[2,7,16],everi:[2,10,16,17],everyth:20,exact:11,exampl:[0,1,2,3,5,8,9,11,12,14,15,16,17,18,19,20],example1:1,example2:1,example3:1,example_cod:11,example_fil:20,exceed:17,excel:0,excellent_data:0,except:[2,9,12,16,17,20],exclud:[12,16,20],excludetyp:[3,20],exclus:[2,3,16],exectu:20,execut:[0,2,3,6,8,16,17,18,20],executor:7,exercis:17,exhaust:17,exist:[2,3,5,8,9,12,13,16,17,18,20],exit:3,expand:17,expect:17,expir:[2,16,17],explanatori:17,explicit:[2,11,16],explicitli:[17,18],exponenti:17,expos:17,extens:17,extern:[2,5,16,17],external_sync:[2,16],externalfilehandl:[2,16],externalobjectstorag:[2,16],externals3storag:[2,16],externalstorag:[2,16],extra:[16,19,20],extraarg:8,extract:12,extract_filenam:12,extract_prefix:12,extract_synapse_id_from_queri:12,extract_user_nam:12,extract_zip_file_to_directori:12,f:[2,3,12,16,17,18,20],fail:[3,17],failur:[17,20],failurecod:20,fairli:9,fall:17,fals:[0,2,3,7,8,9,10,11,12,16,17,20],famili:[10,16],familiar:18,fanci:[2,16],fantast:[15,18],fast:17,faster:[9,17],favor:[4,17],favorit:[9,18],featur:[16,18],fetch:[2,3,11,16],few:[1,9,18,19],field:[0,2,5,6,9,10,12,16,17,20],figur:[12,15,17],file1:[14,18,20],file2:[14,18,20],file:[1,2,3,4,7,8,10,12,14,15,16,17,18,20],file_ent:[8,17,20],file_handl:[8,9],file_handle_id:[2,16],file_map:[2,16],file_path:[2,7,16],file_s:[2,16],file_to_upd:11,file_typ:[2,16],file_url_to_path:12,file_version_strategi:[3,8,20],fileannotations1:18,fileannotations2:18,fileent:[17,18,20],fileentityid:[2,16],filehandl:[2,9,12,15,16,17,20],filehandleendpoint:[2,16],filehandleid:[2,9,10,16],filenam:[5,7,8,12,15,17,20],filenameoverid:17,filenameoverrid:5,filepath1:18,filepath2:18,filepath:[9,12,18,20],filesystem:17,filetyp:11,fileview:17,fill:17,filter:[2,16,17],find:[2,4,16,17,20],find_data_file_handl:12,findentityid:[2,16,17],fine:16,finish:12,first:[2,4,5,8,9,10,11,12,14,16,17,18,20],firstnam:[10,16],fit:4,fitler:17,fix:5,flag:[2,3,16,17],flat:[1,16,20],flavor:9,folder:[2,3,9,14,16,17,18,20],folder_nam:[2,8,16],folderinsidezipifani:12,follow:[2,3,4,5,8,9,11,14,16,17,18,20],followlink:[2,3,5,16,20],foo1:16,foo2:16,foo:[1,2,3,5,6,8,9,12,16,17,18,20],foobar:[4,17,20],foobarbat:[5,16],foocol:16,foolist:18,foord:19,forc:[2,3,8,16,17,20],force_restart:7,forcevers:[2,11,16,17,20],foreign:[10,16],forenam:[10,16],forgetm:[2,16],form:[2,3,8,9,12,16],format:[2,3,5,6,9,12,16,17,18,20],format_time_interv:12,formatt:17,forward:[12,19],found:[2,5,8,16,17,18,20],fraction:17,frame:18,framework:17,fredcommo:[2,16],freds_profil:[2,16],free:19,frequent:[2,16],fresh:[2,16],from:[0,1,2,3,4,5,6,7,9,11,12,14,15,16,17,19,20],from_file_handle_id:20,from_map:[16,17],from_storage_location_id:20,from_table_queri:9,from_unix_epoch_tim:12,from_unix_epoch_time_sec:12,ftp:[2,16,17],full:[8,12,17],fulli:3,func:20,futur:[2,3,5,12,16,17,18],g:[0,2,5,8,9,11,12,16,17,18,20],gb:[7,12,17,20],gene:[9,18],gener:[0,2,3,4,7,8,9,12,16,17,18,20],generate_sync_manifest:20,generatemanifest:[17,20],genome_assembl:16,georg:18,get:[2,4,5,6,8,9,11,12,15,17,18,19,20],get_annot:[1,2,16,17,18],get_counts_by_statu:20,get_download_list:[2,16,17],get_download_list_manifest:[2,16],get_membership_statu:[2,16],get_migr:20,get_properti:12,get_sts_storage_token:[2,8,16],get_team_open_invit:[2,16],getannot:[2,14,16,17],getchildren:[2,12,16,17],getcolumn:[2,9,16,17],getconfigfil:[2,16],getent:17,getevalu:[2,6,16,18],getevaluationbycontentsourc:[2,6,16],getevaluationbynam:[2,6,16],getmystoragelocationset:[2,16],getpermiss:[2,6,16,18],getprojectset:[2,16],getproven:[2,16],getsubmiss:[2,6,16,17,18],getsubmissionbundl:[2,16,18],getsubmissionstatu:[2,6,16,18],gettablecolumn:[2,9,16],getteam:[2,16],getteammemb:[2,16],geturi:16,getuserprofil:[2,16,17],getwiki:[2,15,16,18],getwikiattach:[2,16],getwikihead:[2,15,16,17],gh:17,git:16,github:[0,16,17,20],githubusercont:0,give:[2,9,16,17],given:[1,2,3,5,9,10,12,16,17,20],glanc:11,glib:[2,16],global:18,gnarli:[0,16],gnome:[2,16],go:14,goal:9,good:[0,6,16],goog:[0,16],googl:[0,16],gotcha:1,grain:16,grant:[2,16],graph:[12,16],graphic:[15,16],greater:18,group:[2,10,16,18],guarante:[2,16],guess_file_nam:12,guid:16,h:[3,18],ha:[0,2,3,5,6,8,9,12,16,17,18,20],hack:[0,12,16,17],had:[9,17],halflif:[5,9,16],handl:[2,7,8,9,10,12,15,16,17,18,20],hang:17,hard_limit:12,has_item:16,has_kei:16,hash:[2,16],have:[0,1,2,3,4,5,8,9,11,16,17,18,20],head:16,header:[2,5,9,12,16,17,19],headless:[2,16],held:5,help:[12,13,16,17,18],helper:17,here:[0,2,8,9,15,16,17,18,20],hex_digit:18,hexadecim:[2,16],hg19:16,hh:18,hidden:17,hierarch:16,hierarchi:[17,20],higher:[16,17,20],hint:18,hold:[5,9,16],home:[2,4,8,16,17],host:[5,16,17],hostkei:17,hotfix:17,hous:17,how:[2,8,9,11,12,14,16,17,18,20],howev:[4,8,11,17],html:[2,3,5,6,9,16,20],http:[0,2,3,5,6,9,12,16,20],huge:20,hundr:20,hypothet:16,i:16,icon:[10,16],id:[0,1,2,3,5,6,7,8,9,10,12,14,15,16,17,18,20],id_of:12,idea:[0,6,16],identifi:[2,8,9,10,16,18],ie:[2,16,20],ifcollis:[2,16,20],ignor:[2,5,12,16,17],ignoredannotationcolumnnam:[5,9,16],illustr:[8,18],imag:[5,10,16,17],immedi:[9,16],immut:[2,6,9,16],impact:[8,17],implement:[3,7,8,12,17,18],implicit:11,improv:8,inaccess:[2,16],includ:[2,3,4,5,8,9,15,16,17,18,20],include_table_fil:[3,8,20],includeentityetag:17,includeentitytyp:[5,9,14,16,18],includerowidandrowvers:[2,9,16],includetyp:[2,16,17,20],inclus:[9,16],incompat:17,inconsist:17,incorrect:17,incorrectli:17,increas:17,increment:[2,16,17,20],independ:8,index:[2,3,8,9,16,17,20],index_col:9,index_files_for_migr:[8,17,20],indic:[2,6,7,12,16,17,20],individu:[8,16,17,20],industri:[10,16],info:8,inform:[3,8,9,10,11,15,17,18],ing:[5,16],inherit:[2,16],initi:[2,7,8,16],inlin:4,inner:9,input:[12,16,20],input_str:12,insert:17,insid:[0,4,16],inspect:[8,12,20],instal:[2,4,8,9,13,17],instanc:[2,8,16,18],instanti:18,instead:[2,4,8,16,17,20],instruct:[5,16,17,18],int64:[17,20],intact:3,integ:[5,9,16,17,18],integr:[16,17,18],integration_test_ent:17,intend:[12,18],intent:8,intention:17,interact:[3,8,16,18,20],interactic:20,interchang:5,interest:[2,16],interfac:[16,17,18,20],intern:[5,8,9,16,20],interpret:[18,20],interrupt:17,interv:[3,12,20],introduc:17,invalid:[2,6,9,16],invalidateapikei:[2,16],invit:[2,10,16,17],invite:[2,16],invite_to_team:[2,16],inviteeemail:[2,16],inviteeid:[2,16],invok:[8,12,17],involv:[2,8,9,16],io:17,is_base64_encod:12,is_certifi:[2,16,17],is_dat:12,is_in_path:12,is_json:12,is_same_base_url:12,is_synapse_id:12,is_url:12,isadmin:[10,16],isbyt:[12,20],isconsist:[2,9,16,17],ish:16,isindividu:[10,16],isn:[11,17],isol:14,isotop:[5,9,16],isrestrict:[2,16],issu:[9,16,17,18],item:[2,5,8,12,16,17,20],item_id:16,iter:[2,9,12,16,18,20],iter_row_metadata:9,itersubclass:12,its:[0,2,5,6,7,8,11,12,14,16,17,18,20],itself:[3,5,8,17,20],jan:12,java:16,jazz:9,jefferson:18,job:17,joe_hack:[0,16],john:9,join:[9,10,16,17],jpg:9,json:[2,3,5,12,16],jsondecodeerror:17,jupo:12,just:[15,16,17,20],k:16,kb:[12,20],keep:[2,3,8,15,16,17,20],kei:[1,2,3,5,8,9,10,12,16,17,20],kenni:9,keychain:4,keyerror:[5,17],keyr:[2,16,17],keyword:[1,2,7,8,12,16],know:[8,9,16,20],known:[2,8,16,20],kwallet:[2,16],kwarg:[1,2,5,6,9,10,15,16,20],l:3,label:[2,16,17],lambda:17,languag:9,larg:[7,8,17],largetext:[9,16,17],last:[10,16,20],lastnam:[10,16],lat_long:1,later:[2,9,12,16],latest:[2,3,13,16,17,20],lead:[2,16,17],leaderboard:[2,3,16],leav:[17,20],left:[2,16,17],legaci:4,len:[16,17],length:20,let:[9,14,15,16,18],letter:18,level:[16,20],leverag:[8,17],liabil:20,libdbu:[2,16],libnam:18,librari:[8,9,16,17,18,19],lieu:[2,16],life:[2,16,17],lighter:12,lightweight:[5,16],like:[1,2,3,4,5,6,9,16,17,20],limit:[2,3,8,9,12,16,17,18],limitsearch:[2,3,16],lincoln:18,line:[4,11,16,17,20],lineend:[2,9,16],linesep:[2,16],linestoskip:9,link:[2,3,6,8,9,10,14,16,17,20],lint:17,linux:[2,16,17],list:[0,2,5,8,9,10,12,15,16,17,18,20],list_of_fil:[2,16],liter:17,ll:[9,16],load:[2,9,12,16,18],loadent:17,local:[2,3,5,8,11,12,16,17,20],local_file_path:8,local_st:[5,9,16,17],localfilepath:12,locat:[1,2,3,5,10,11,16,17,20],lock:17,log:[2,3,4,8,16,17,20],login:[9,14,16,17,18,20],logo:[15,17],logout:[2,16],long_runtime_func:20,longer:17,look:[5,16,17],lookup:[2,16],loss:[2,16],lot:9,luck:9,m:[3,18],mac:[2,4,16],machin:[2,5,16],made:[17,18],mai:[2,3,4,6,8,9,12,16,17,18,19],main:17,major:17,make:[0,2,9,11,12,16,17,18],make_bogus_binary_fil:12,make_bogus_data_fil:12,manag:[5,7,16,17,18],mani:[12,16,18],manifest:[2,16,17,20],manifest_path:[17,20],manifestfil:20,manipul:[5,18],manual:[5,8,16,20],map:[1,2,5,9,12,16,20],markdown:[3,15,16,17,18],markdown_fil:16,markdownfil:[15,16],mass:[5,9,16],master:16,match:[12,17],materi:[16,17],materializedview:[2,16,17,20],materializedviewschema:[16,17],matrix:16,max:[2,16,17,20],max_thread:[7,17],maximum:[2,9,16],maximumlistlength:[9,16,17],maximums:[9,16,18],mayb:20,mb:[12,20],md5:[2,12,16,17],md5_fn:7,md5_for_fil:12,md5queri:[2,16],md:[13,16,17],me:[2,3,16,17],mean:[3,6,7,13,16,17,20],meant:12,measur:0,mechan:8,member:[2,5,10,16,17],membership:[2,10,16],membershipinvit:[2,16],membershiprequest:[2,16],membershipstatu:[2,16],memo:12,memoiz:17,memori:20,mention:[5,17],messag:[2,3,6,10,16,17,20],messageattach:20,messagebodi:[2,16],messagesubject:[2,16,20],met:19,meta:[8,18],metaclass:17,metadata:[1,2,3,5,8,10,11,16,17,20],meter:17,method:[0,2,4,6,8,12,16,17,18,20],michael:19,microsoft:19,midnight:12,midwai:17,might:[0,2,9,16],migrat:17,migrate_funct:20,migrate_indexed_fil:[8,17,20],migrationadmin:17,migrationresult:20,million:20,millisecond:[12,18],mime:[2,16],mimetyp:[2,16],min:[17,20],min_remaining_lif:[2,16],mingw:19,minim:[4,9],minimum:[2,7,16,20],minor:11,minut:[2,12,16],mirror:17,mishandl:17,miss:17,mission:[2,16],mitig:17,mix:17,mm:18,mmm:18,mmse:[6,16],mode:[3,17,20],model:[2,6,9,10,16,17,18,20],modifi:[2,3,5,9,12,14,16,17,20],modifiedbi:[5,9,16],modify_benefactor:[2,16],modul:[7,12,16,17,18],monitor:17,more:[1,3,8,9,10,11,14,15,17,18],more_gen:9,most:[2,3,5,8,9,11,12,16,17],mostli:[2,9,16,17],move:[2,3,8,16,17],ms:12,much:12,multi:[3,17],multi_thread:17,multipart:17,multipart_upload:[7,17],multipart_upload_fil:7,multipart_upload_str:7,multipl:[0,2,3,4,15,16,17,18],multithread:[3,17],must:[2,3,4,5,8,9,16,17,18,20],mutual:[2,16],my:[0,2,5,6,8,9,14,15,16,17,18],my_annot:1,my_fil:[5,20],my_funct:20,my_new_name_fil:20,my_newname_fil:5,my_personal_access_token:[4,17],my_profil:[2,16],my_project:1,my_queri:20,mydomain:[0,16],myown:[2,16],mytabl:[5,9,16],n:[2,8,9,12,16,17,18],name:[0,2,6,8,9,10,11,12,14,16,17,18,20],namedtupl:9,namespac:[5,18],narg:17,nativ:[2,16],necessari:[2,8,16,18],need:[2,4,5,7,8,9,12,16,17,18,19,20],neg:17,network:17,neutral:12,never:5,new_col_valu:16,new_fil:11,new_item:16,new_par:[2,16],new_row:9,new_vers:11,newcontenttyp:20,newer:[13,16,17,20],newfilenam:20,newk:9,newli:[14,17],newsynid:20,next:[8,9,12,17,18],nice:9,nicknam:[2,3,16],noforcevers:3,non:[2,8,12,16,17],none:[0,1,2,3,5,7,9,12,13,15,16,17,20],nor:17,normal:[1,5,11,20],normalize_path:12,normalize_whitespac:12,not_found:20,notat:5,note:[2,3,4,5,8,9,13,15,18],noth:[2,8,16,20],notif:[2,3,10,16],notifi:[17,20],notificationset:[10,16],notify_decor:20,notifym:[17,20],now:[0,1,4,8,9,11,15,17,18],number:[2,3,6,7,9,11,12,16,17,20],o:[3,8],oauth:17,obj:[2,12,16],object:[1,2,3,5,6,7,8,9,10,12,15,16,17,18,20],objectid:20,obtain:[4,8,17,20],occ:[10,16],occasion:17,occur:[8,17,20],odd:12,off:17,offici:[5,16],offset:[2,9,12,16,17,18],ok:4,old:[2,11,16,17,20],oldsynid:20,omit:[2,8,16],onc:[2,4,8,9,12,16,17,18,19],one:[1,2,3,4,5,6,8,14,16,18,20],ones:[2,9,16,17],onli:[2,3,4,5,8,9,11,12,16,17,18,20],onlin:16,onload:18,onto:8,ontolog:[0,16],onweb:[2,16,17,18],open:[2,3,4,6,12,16],openinvit:[2,16],openstack:[2,16],oper:[2,8,12,14,16,17,18],optimist:[9,10,16],option:[0,1,2,3,5,7,8,9,15,16,17,18,19,20],order:[2,8,11,12,16,17,18],ordinari:1,org:[2,3,4,5,6,9,10,12,16,17,20],origin:[3,16,20],originalqueryresult:16,os4:18,os:[2,4,5,9,16,19,20],other:[2,3,4,5,8,12,14,16,17,18,20],other_annot:1,otherwis:[2,8,9,12,16,18,20],our:[0,2,9,16,17,18],out:[10,12,16,17,20],outdat:17,output:[0,2,3,8,16,17,20],output_fil:3,output_format:[2,8,16],outsid:[7,17,20],over:[2,4,9,12,14,16,17,20],overload:[16,20],overwrit:[2,16,17,20],overwritten:17,own:[2,5,9,16,17,18,19],owner:[2,5,8,15,16,17,18],ownerid:[2,10,16],ownership:8,p:[3,16,17],packag:[12,16,17,18,20],page:[2,3,15,16,17,18,20],pagin:[2,16],paginatedresult:17,pair:[1,3,4],panda:[16,17,18,20],parallel:17,param:[2,7,9,12,16,20],paramet:[0,1,2,3,5,6,7,8,9,10,11,12,13,15,16,17,20],parameter:17,paramiko:[17,19],parellel:17,parent:[1,2,3,5,8,9,14,15,16,17,18,20],parent_id:20,parent_synapse_folder_id:8,parentid:[2,3,4,8,11,16,17,20],parentwikiid:[15,16],pars:17,part:[7,17],part_fn:7,part_siz:7,partial:16,partial_chang:16,partial_rowset:16,partialrow:[16,17],partialrowset:[16,17],particular:[2,6,16,18],particularli:8,pass:[0,2,3,4,7,8,11,12,16,17,18,20],password:[2,3,4,16,17,18],past:18,paste0:18,pat:16,path1:12,path2:12,path:[2,3,5,8,9,11,12,14,15,16,17,18,20],patient_id:[16,17],paus:17,payload:[2,16],pd:[9,16],peer:17,pend:[2,16],per:[7,8,20],perform:[2,3,8,16,17,20],period:[2,16],perm:18,permiss:[0,2,3,5,16,17,18],persist:5,person:[2,4,10,16,17],pick:8,pictur:[10,16],piecem:0,pin:17,pip3:16,pip:[2,8,16,17,18,19],pipe:17,pipelin:[6,16,18],pkgname:18,place:[2,3,16,17,20],plai:9,plain:[1,2,16,17],platform:[9,12,16,17],pleas:[2,4,5,8,9,11,14,16,17],plfm:17,plu:9,png:[5,15,16],point:[12,17,18],pool:17,popul:[2,9,12,16,17],popular:9,port:[5,16],portalendpoint:[2,16],posit:[10,16,17],possibl:[0,2,3,5,16],post:[2,9,16,17],postfix:[12,20],posturi:16,potenti:[5,16,20],powershel:[2,3,16],practic:[10,16],pre:[2,16,17],prebuilt:16,precaut:18,preced:5,predict:[6,16,18],prefer:[2,10,16],prefix:[2,12,16,20],preliminari:9,present:[1,5,8,16,17],presid:18,presign:17,presignedurl:17,pretti:[2,16],prevent:[9,17],preview:7,previou:[2,9,16,17,20],previous:[5,7,17,20],previouslytransf:12,previouslyupload:3,prez_birthdai:18,princip:[10,16],principalid:[2,16,18],print:[2,3,5,9,12,13,16,17,18,20],printabl:12,printent:[2,16],printprogress:12,printtransferprogress:12,prior:[4,17],prioriti:[4,17],privat:16,problem:[3,17],proce:8,proceed:8,process:[0,2,3,6,7,8,9,16,17,18,19],produc:0,product:[2,16],production_endpoint:[2,16],profil:[2,10,12,16],profilepicurefilehandleid:[10,16],program:[3,17],programat:[8,17],programmat:[16,17,20],progress:[6,12,16,17,20],project:[2,3,6,8,9,14,15,17,18,20],project_or_fold:[5,9,16],project_or_folder_id:[5,9,16],project_set:8,projectnam:18,projectset:[2,16],projid:3,prompt:[3,4,8,17],propag:9,proper:[12,16,17,18],properli:[8,17,18],properti:[1,2,8,9,12,16,17,18,20],prototyp:16,proven:[1,2,15,17,20],provenance_cach:20,provenance_fil:18,provid:[2,5,7,8,9,14,16,17,18,20],proxi:[2,16,20],proxystorag:[2,16],proxyurl:[2,16],pseudonym:[6,16],publicli:18,pull:[12,17],pure:8,purg:17,purpos:4,push:[3,16,20],put:[2,8,16,17,20],puturi:16,py:[0,9,16,17,20],py_instal:18,pycrypto:19,pypi:[16,17,18],pysftp:[16,19],pytest:17,python3:[2,4,16,17],python:[1,2,3,4,5,9,11,17],q1:[6,16],q:[3,17],qualiti:17,queri:[2,12,14,16,17,18,20],query_limit_and_offset:12,query_result:[14,16],queryabl:18,queryresult:18,querystr:[3,18],question:[6,16],queue:[2,6,16,17],quick:17,quickli:9,quit:9,quiz:17,quot:[2,3,16,17],quotecharact:[2,9,16],quux:3,qux1:9,qux2:9,qwerti:[2,16,17],r3:12,r:[0,3,9,16,17],race:17,rais:[2,16,17,20],ran:20,random:[11,12,18],rang:[9,16,17],rank:[14,18],rate:[1,12,17],rather:[2,8,16,17],raw:[0,16],raw_data:11,rawconfigpars:[2,16],rc:17,rdata:[0,16],re:[3,5,8,9,16],read:[2,5,8,9,12,16,17,18],read_csv:9,read_onli:[2,3,16],read_writ:[2,3,8,16],readabl:[5,9,12,16],readi:20,readlin:16,readm:[13,16,17,20],readmanifestfil:20,realli:[2,6,16],reason:[12,17],receiv:[2,16],recent:[2,3,9,11,16],recip:12,recogn:12,recogniz:17,recommend:[2,4,5,8,11,13,16,17],record:[1,2,3,8,15,16,20],recov:17,recoveri:17,recurs:[3,8,16,17,20],redirect:3,reduc:17,refer:[0,2,5,17],referenc:[12,20],reflect:[14,17,18],reformat:17,refresh:[2,16,17],regard:[2,10,16],regardless:18,region:17,regist:[2,3,10,16],reinstal:16,reject:[2,9,16],relat:[2,16,17,18],releas:13,release_not:[13,16],relev:17,reli:17,remain:[2,16,17],rememb:[3,17],rememberm:[2,3,4,16,17,18],remot:[12,17],remov:[2,3,5,9,12,16,17],remove_from_download_list:[2,16],remove_item:[16,17],removecolumn:9,renam:[5,9,17],render:16,reorder:20,repeatedli:[2,16],replac:[2,3,9,12,16,17,18,20],replace_with_your_keyring_password:[2,16],repo:[2,3,9,10,16,20],repoendpoint:[2,16],report:[13,16],repositori:[2,5,14,16,17,18],repositorynam:[5,16],repres:[0,1,2,5,6,9,10,12,15,16],represent:[0,10,16],reproduc:[16,20],request:[2,6,16,17],requester_pai:[2,16],requests_sess:[2,16],requir:[2,5,8,9,15,16,17,18,19,20],research:16,reserv:20,reset:17,resid:[17,20],resolv:17,resourc:[0,2,10,16,17],respect:17,respons:[2,12,16],rest:[2,3,6,9,16,17,20],restart:[7,12,17],restdelet:[2,16],restget:[2,16,18],restpost:[2,16],restput:[2,16],restrict:[2,8,16,17],result:[0,2,5,8,9,12,16,17,18,20],resultsa:[2,16,17],resum:[7,17],reticul:16,retri:[3,17,20],retriev:[2,3,6,7,8,14,16,17,18],retrypolici:[2,16],review:[2,16],revis:16,revoc:4,right:17,rna:11,robust:[7,17],rollin:9,rollinsbn1558:9,rollinsbn4001:9,root:[2,3,16,20],rough:8,row:[2,16,17,20],row_etag:9,row_id:[9,16,17,20],row_reference_set:9,row_vers:9,rowid:[9,16],rowidandversioninindex:[9,16],rowmetadatatupl:9,rowset:[2,16,17],rowsett:[9,16],rst:17,rule:[5,8],run:[2,3,7,8,16,17,19,20],rust:17,rzing:9,s3:[2,3,16,17],s3_client:8,s3_file_kei:[2,16],s3_kei:8,s:[0,1,2,3,4,5,7,8,9,10,12,14,15,16,17,18,19,20],safe:[12,20],sage:[0,14,16,18],sagebionetwork:[2,3,6,9,10,16,20],sai:[5,9,16],same:[0,3,8,11,12,16,17,18,20],sampl:[0,8,17,18],save:[4,11,17],scalar:12,scale:15,scan:17,scenario:8,schema:[2,14,16,17,18,20],schemabas:17,scheme:[10,16],scope:[4,5,8,9,14,16,17,18],score:[2,6,16,18],scratch:7,script:[16,17],search:[2,3,14,16,17,18],sec:12,second:[2,4,12,16,17,18],secret:[2,16],secret_access_kei:8,secretkei:[2,16],secretstorag:17,section:[4,8],secur:[4,8,17],see:[0,1,2,3,5,6,8,9,11,12,13,14,16,17,18,20],seed:12,seem:17,select:[2,3,9,10,12,14,16,17,18,20],selectcolumn:[9,16],self:[2,16],semi:20,send:[2,3,16],send_membership_invit:[2,16],sendmessag:[2,3,16,17,20],sent:[2,10,16,20],sep:18,separ:[0,2,5,8,9,12,16,17,18,20],seq:11,sequenc:12,seri:9,serial:[12,17],serious:[2,16],serv:[2,16],server:[2,9,16,17,19],servic:[2,8,12,16,17],servicetimeoutsecond:[2,16],session:[2,8,16,17,18],session_token:8,sessiontoken:[2,16],set:[0,1,2,4,5,8,9,10,16,17,20],set_annot:[1,2,16,17,18],set_entity_typ:[9,16,17,18],setannot:[2,14,16,17],setcolumnhead:9,setendpoint:[2,16],setpermiss:[2,6,16,17,18],setproven:[2,3,11,16,20],setstorageloc:[2,16],setting_typ:[2,16],settl:9,setup:[2,16],sever:[2,16,17],sftp:[2,16,17],sh:[2,16],share:[4,7,16,17],shared_executor:7,shell:[2,3,4,8,16,20],shortcut:[0,17],should:[2,3,5,7,9,10,16,17,19,20],shouldn:17,show:[2,5,12,16,17,18],shown:[2,16],side:7,sign:[2,16,17],silenc:17,silent:[2,3,16,17],similar:[8,9,14,17,18],simpl:16,simple_t:[9,16],simpli:[4,14],simplifi:17,sinc:[2,10,11,12,16,18,20],singl:[2,3,8,12,16,17],single_thread:17,site:[16,17],situat:[1,5,8],size:[2,9,16,17],skip:[2,3,16,20],skip_check:[2,16],skipcopyannot:[3,20],skipcopywiki:3,skipcopywikipag:20,slash:12,slow:8,small:[16,17],smallish:[2,16],snake_cas:12,snapshot:[2,16,17,20],so:[2,3,5,8,9,16,20],solut:8,some:[0,2,5,8,9,12,14,16,17,18],someon:12,someth:9,sonni:9,soon:[2,16],sort:[2,12,16],sortbi:[2,16],sortdirect:[2,16],sourc:[2,3,5,6,12,16,17,20],source_storage_location_id:[3,8,20],space:[3,8,12,17,20],special:[8,9],specif:[2,3,5,16,17,18,20],specifi:[0,2,3,4,5,8,12,15,16,17,18,20],speed:17,spell:17,sphinx:17,spinner:12,split:16,sporad:17,spot:17,sprintf:18,spuriou:17,sql:[2,3,9,16,17],sqlite:[8,20],ss:18,ssh:[2,16],ssh_except:17,sshexcept:17,st:[2,16,17],stabil:17,stabl:[3,16],stack:[17,20],stage:[2,16,17],staging_endpoint:[2,16],stai:16,standard:[16,17,18],start:[2,4,8,9,12,16,17,18],state:[16,18,20],statement:[9,16,17],statist:[17,20],statu:[2,16,17,18,20],stderr:17,stdout:[3,17],step:[0,8,9,11,16,19,20],stick:[6,16],still:17,stop:[2,16],storag:[2,3,9,16,17,20],storage_loc:8,storage_location_id:[2,7,8,16],storage_typ:[2,16],storageloc:[2,16],storagelocationid:[8,17],storagelocationset:[2,16],store:[2,4,5,6,7,8,9,11,14,15,16,17,18,20],str:[1,2,7,16,20],straight:19,straightforward:9,strand:[9,18],string:[0,2,3,5,7,9,12,14,16,17,18,20],stringio:[9,16],strip:[12,20],structur:[8,16,17,20],sts_enabl:[2,8,16],stuff:[15,18],style:[12,16,17],sub:[2,15,16,17],subclass:[5,9,12,16],subcommand:17,subfold:[2,8,16,20],subject:[2,16,20],submiss:[2,3,16,17,18],submissionannot:[6,16],submissionattach:20,submissioninstructionsmessag:[6,16,18],submissionreceiptmessag:[6,16,18],submissionstatu:[2,6,16,18],submissionstatusenum:[6,16],submissionview:[2,16,17,20],submissionviewschema:[2,16,17],submit:[2,6,16,17,18],submitt:[2,16],submitteralia:[2,3,6,16],subpag:[2,16,20],subpageid:[2,16,20],subpars:3,subsequ:[8,20],substanti:17,substitut:4,subtre:3,subwiki:20,sudo:[2,16,19],suffici:8,suffix:[9,16],suitabl:[9,16],summari:[10,16,17,20],suppli:[13,16],support:[2,3,4,5,8,9,14,16,17,18],supportssubfold:[2,16],suppress:[2,3,16,17,20],sure:[11,12,17],surnam:[10,16],sy:[17,18],syanpser:18,syn000000:9,syn000:[16,17],syn100009:[0,16],syn111:[16,17],syn1223:20,syn12312:[2,16],syn123450:20,syn123456:[0,11,15,16],syn12345:[0,2,6,12,16,17,20],syn12346:0,syn1234:[0,9,18,20],syn1235:[0,18,20],syn123:[1,2,3,4,5,8,9,16,17,20],syn12433:20,syn1243:20,syn124:20,syn1824434:15,syn1899498:16,syn1906479:[2,16],syn1906480:[2,16],syn1917825:[2,16],syn2222:[11,16,17],syn222:16,syn2290704:[6,16],syn23456:[0,16],syn2345:20,syn3260973:11,syn333:16,syn33455:20,syn3345:20,syn34234:17,syn345678:20,syn45678:20,syn4567:[0,18],syn456:[2,16,17],syn4988808:17,syn56789:11,syn789:[16,17],syn888:8,syn999:8,syn:[0,2,4,5,6,7,8,9,11,14,15,16,17,18,20],synanps:[2,16],synap:[2,16],synaps:[0,1,5,6,8,9,10,11,12,14,15,17,20],synapse_auth_token:[2,4,16,17],synapse_id:6,synapse_is_great:17,synapse_metadata_manifest:20,synapse_sts_s3_loc:8,synapsecach:[17,20],synapsecli:[0,1,2,4,5,6,7,9,10,11,12,13,14,15,16,17,19,20],synapseconfig:[2,3,8,16,17],synapseid:15,synapsemd5mismatcherror:17,synapsepassword:3,synapsepythoncli:[0,16],synapseshinyapp:18,synapsestor:[2,5,16,20],synapseunmetaccessrestrict:17,synapseus:3,synapseutil:[2,3,5,8,16,17,20],sync:[16,17],syncfromsynaps:[17,20],synchron:[3,18,20],synctosynaps:[3,17,20],syndccutil:17,synget:[17,18],syngetannot:14,synid:[2,5,16,17,18,20],synlogin:18,synonym:[2,16],synpi:17,synstor:18,syntax:[2,16,17],synu:17,system:[1,2,3,5,12,16,17],t:[2,3,5,11,16,17,18,20],tab:[16,20],tabl:[2,12,14,17,20],table_query_timeout:[2,16],tableabstractbaseclass:[9,16],tableent:[9,16,20],tableexampl:3,tableid:[9,16,18],tablequeri:[2,9,14,16,17,18,20],tablequeryresult:[9,16],tableview:[16,17],tabular:9,tag:[2,10,16,17],take:[1,2,4,5,9,12,16,17,18],taken:[2,5,16,18],target:[0,2,3,5,16,20],target_dir:12,targetid:[0,5,16],targetvers:[0,5,16],targetversionnumb:[0,16],team:[2,3,6,16,17],teamattach:20,teamid:[2,10,16],teammemb:[2,10,16,17],teammembershipstatu:[2,16],teamnam:[2,3,16],techniqu:[9,18],tempfil:18,templat:17,temporari:12,term:[0,2,16],termin:[12,17],test:[0,2,12,14,16,17,18],test_cach:17,test_command_get_recursive_and_queri:17,test_ent:[2,16],test_get_with_downloadlocation_and_ifcollis:17,test_threaded_access:17,text:[0,2,7,16,20],than:[2,8,15,16,17],thank:18,thei:[1,5,8,9,12,16,17,18],them:[4,8,9,10,15,16,17],themselv:[5,8,17],thi:[0,1,2,3,4,5,6,7,8,9,10,11,12,15,16,17,18,19,20],thing:[5,17],thoma:18,those:[2,9,16,17],though:5,thought:[2,16],thousand:20,thread:[3,7,12,17,20],threadsafe_gener:12,threadsafe_it:12,three:[2,3,5,16,20],through:[7,8,16,17,20],throughput:17,thrown:17,thu:5,thumb:8,time:[2,5,8,9,10,11,12,16,17,18],timeout:[2,16,17],timestamp:[9,17],titl:[2,10,15,16,18,20],tmp:8,to_file_handle_id:20,to_list:12,to_loc:20,to_unix_epoch_tim:12,to_unix_epoch_time_sec:12,tobetransf:12,togeth:[2,14,16],token:[2,4,8,16,17],tool:[1,8,16,17,18,19],top:16,topolgical_sort:12,topolog:12,total:[2,12,16,20],totalcal:20,totalnumberofresult:17,touch:12,traceback:[3,20],track:[11,15,16],tradit:8,train:9,transcriptionfactor:[9,18],transfer:[12,17],transform:[12,16],transit:17,translat:[16,18],travers:20,travi:17,treat:[5,16],tree:[3,16],tri:[0,12,16],trigger:[7,8],tripl:12,truncat:[16,17],tsv:[3,17,20],tupl:[2,9,12,16],turn:[16,17],two:[0,2,5,8,9,12,16,17],txt:[2,4,5,11,12,14,16,18,20],type:[0,2,3,5,9,10,12,14,16,17,18,20],type_list:17,typic:[2,5,8,16],typo:17,tyu:[2,3,16],u:[3,17],ubuntu:[2,16,19],ugli:17,unambigu:5,unauthor:20,unavail:[2,16],unchang:[16,20],uncom:4,under:[2,4,5,16,17,20],underli:[3,8,17,20],understand:8,undesir:8,unfortun:[5,12],unicodeencodingerror:17,uniform:[10,16],uninform:17,union:[1,2,16],uniqu:[2,5,6,8,10,12,16,18,20],unique_filenam:12,unit:[0,17],unit_test_cli:0,unix:[9,12,17,18],unless:[2,8,16,20],unlik:18,unlock:[2,16],unmet:17,unpars:17,unsaf:[2,16,17],unstabl:17,unsuccessfulli:17,untouch:20,unus:[2,16],up:[0,2,8,12,16,17,18],updat:[2,3,6,8,9,10,12,17,18,20],update_markdown:16,updateact:[2,16],updated_fil:11,updateent:17,updateexist:[3,20],updatelink:20,updatesynid:20,upgrad:[3,13,16,17],upload:[2,3,5,8,9,12,16,17,20],upload_fil:8,upload_request:7,uploaddestin:7,uploadfil:17,uploadfilehandl:[2,16,17],uploadsynapsemanagedfilehandl:[9,17],upon:[2,6,16],uri:[1,2,10,16],url1:12,url2:12,url:[0,2,3,5,10,12,16,17,20],urlencod:18,urllib3:17,urllib:17,urlretriev:17,us:[0,1,2,3,5,6,9,10,11,12,16,17,20],usabl:17,usag:[2,8,16,17],use_boto_st:8,use_boto_sts_transf:8,usedent:[0,16,17],usedurl:[0,16,17],user:[1,2,3,4,5,6,7,8,9,10,12,16,17,18,20],user_id:[6,17],usergrouphead:[10,16],userid:[2,9,16],userid_list:17,usernam:[2,3,4,10,16,17,18],userprofil:[10,16],userprofileattach:20,usual:[2,5,6,9,16],utc:9,utf:[5,16],util:[8,17,20],uuid:[2,16],uw:[14,18],v1:[16,17],v2:17,v:[3,14,18],valid:[2,3,8,9,12,16,17,20],valu:[1,2,3,5,9,12,16,17,18,20],valueerror:[17,20],variabl:[2,5,9,16,17],varieti:8,variou:[17,18],vcf:17,ve:[0,15,17],verifi:20,verificationsubmiss:20,verify_exist:12,version:[2,3,5,6,8,9,12,15,16,17,18,20],version_check:[13,16],version_url:[13,16],versioncom:[11,17],versionlabel:[2,16],versionnumb:[2,6,9,16,17],verson:20,vi:[14,18],via:[2,3,6,8,16,17,20],view:[2,4,9,16,17,20],view_ent:17,view_tabl:17,view_typ:17,viewbas:17,viewtyp:17,viewtypemask:17,vignett:17,virtual:[5,16,18],visibl:17,visit:14,vitualenv:[2,16],voidspac:19,vol:9,volum:8,vuner:17,w3c:[0,16],wa:[0,2,3,8,16,17,20],wai:[1,4,5,6,8,12,14,16,17,20],wait:[2,16],walk:[2,16,17],walk_funct:20,walkedpath:20,want:[8,9,17,18,20],warn:[2,12,16,17],warn_if_inherit:[2,16],wasexecut:[0,16],washington:18,we:[0,1,2,3,4,5,8,9,11,14,15,16,17,18],weather:20,web:[3,11,15,16,18],websit:[2,3,16],weight:12,weird:17,welcom:[2,16],well:[2,16,17,20],were:[2,12,16,18,20],what:[9,16,20],wheel:17,when:[0,1,2,3,4,5,8,9,10,12,16,17,18,20],whenev:20,where:[2,3,5,7,8,9,12,16,17,18,20],wherea:[1,5,8],whether:[2,3,5,10,12,16,17,20],which:[0,1,2,3,4,5,6,7,8,9,10,12,15,16,17,18,20],white:20,whitespac:12,whizzi:[0,18],who:4,whose:[2,3,5,8,12,16,17,20],wiki2:[2,16],wiki:[2,3,17,20],wikiattach:20,win:[0,16],window:[2,12,16,17],wish:[8,16],with_progress_bar:20,within:[2,3,5,7,8,9,14,16,17,18],without:[2,3,4,8,9,10,16,17,18,20],wonki:17,work:[2,6,9,11,14,16,17,19],workaround:18,workflow:[4,17],would:[4,8,17,20],wrap:[2,3,9,16,17,18,20],wrapper:[2,16],write:[2,4,8,12,16,17,18],writechar:18,written:[12,20],wrong:[6,17],www:20,x:[2,14,16,17,18,20],xxx:17,xyx:20,xyz:[0,1,2,5,9,16,18],y:[8,18],ye:4,year:[9,17],yeild:20,yield:20,you:[0,2,4,5,8,9,11,16,17,18,19,20],your:[2,5,8,9,14,16,17,18,19],yyyi:18,zap:[9,18],zing1:9,zing2:9,zing3:9,zip:12,zip_entry_nam:12,zip_fil:12,zipfil:12,zipfilepath:12},titles:["Provenance","Annotations","Synapse Client","Synapse command line client","Manage Synapse Credentials","Entity","Evaluations","Synapse Multipart Upload","S3 Storage Features","Tables","Teams","File Upload","Utility Functions","Version Functions","Views","Wiki","Synapse Python Client Documentation","Release Notes","Using synapseclient with R through reticulate","Using the Synapse Python Client with SFTP data storage","Overview"],titleterms:{"0":[16,17],"01":17,"02":17,"03":17,"04":17,"05":17,"06":17,"07":17,"08":17,"09":17,"1":17,"10":17,"11":17,"12":17,"13":17,"15":17,"16":17,"17":17,"18":17,"19":17,"2":17,"20":17,"2016":17,"2017":17,"2018":17,"2019":17,"2020":17,"2021":17,"2022":17,"2023":17,"23":17,"28":17,"29":17,"3":[16,17],"31":17,"4":17,"5":17,"6":17,"7":17,"8":17,"9":17,"class":[1,15],"function":[12,13],"import":[0,16],"new":[11,17],One:4,access:[16,18],activ:0,add:3,an:[0,8],annot:[1,3,5,11,14,16,18],api:16,app:18,argument:3,articl:16,associ:3,attach:9,automat:8,awscli:8,boto3:8,bug:17,cat:3,chang:[5,9,11],client:[2,3,16,19],column:9,command:[3,8],config:3,connect:16,content:18,control:16,copi:20,cp:3,creat:[0,3,8,14,15],credenti:[4,8,18],data:[0,1,9,16,18,19],delet:[3,9],describ:20,detail:[1,5],directli:16,dockerrepositori:5,document:16,download:[3,11],embed:15,enabl:8,encod:3,entiti:[0,5,16,18],environ:4,evalu:[6,16,18],extern:8,featur:[8,17],file:[5,9,11],fix:17,folder:[5,8],from:[8,18],get:[3,16],help:3,highlight:17,imag:15,implement:[1,5],improv:17,inform:[2,16],instal:[3,16,18,19],let:4,level:9,line:[3,8],link:5,list:3,locat:8,login:[2,3,4],major:16,manag:4,manifest:3,method:[9,15],migrat:[3,8,20],modul:9,monitor:20,more:[2,16],multipart:7,mv:3,name:[3,5],next:16,note:[16,17],object:0,onweb:3,oper:4,organ:16,overview:[16,20],panda:9,posit:3,programmat:8,project:[5,16],properti:5,proven:[0,3,11,16,18],python:[8,16,18,19],queri:[3,9],r:18,record:0,refer:16,releas:[16,17],reticul:18,row:9,rowset:9,s3:8,schema:[5,9],set:[3,11],sftp:19,share:18,shini:18,show:3,sourc:[0,1],specif:11,st:[3,8],statu:6,storag:[8,19],store:[0,3],stori:17,structur:9,sub:3,submiss:6,submit:3,synaps:[2,3,4,7,16,18,19],synapsecli:[8,18],synapseconfig:4,sync:[3,20],system:4,tabl:[3,5,9,16,18],task:17,team:10,test:3,through:18,time:4,token:3,transfer:8,unix:19,updat:[11,14,15,16],upload:[7,11],us:[4,8,14,18,19],usag:[3,18],util:[12,16],variabl:4,variant:19,version:[11,13],view:[5,14,18],walk:20,what:17,whole:9,wiki:[15,16,18],window:19,without:11,your:4}}) \ No newline at end of file +Search.setIndex({docnames:["Activity","Annotations","Client","CommandLineClient","Credentials","Entity","Evaluation","Multipart_upload","S3Storage","Table","Team","Upload","Utilities","Versions","Views","Wiki","index","news","reticulate","sftp","synapseutils"],envversion:{"sphinx.domains.c":2,"sphinx.domains.changeset":1,"sphinx.domains.citation":1,"sphinx.domains.cpp":5,"sphinx.domains.index":1,"sphinx.domains.javascript":2,"sphinx.domains.math":2,"sphinx.domains.python":3,"sphinx.domains.rst":2,"sphinx.domains.std":2,sphinx:56},filenames:["Activity.rst","Annotations.rst","Client.rst","CommandLineClient.rst","Credentials.rst","Entity.rst","Evaluation.rst","Multipart_upload.rst","S3Storage.rst","Table.rst","Team.rst","Upload.rst","Utilities.rst","Versions.rst","Views.rst","Wiki.rst","index.rst","news.rst","reticulate.rst","sftp.rst","synapseutils.rst"],objects:{"":[[16,0,0,"-","synapseclient"],[20,0,0,"-","synapseutils"]],"synapseclient.Activity":[[16,2,1,"","executed"],[16,2,1,"","used"]],"synapseclient.Dataset":[[16,2,1,"","add_folder"],[16,2,1,"","add_folders"],[16,2,1,"","add_item"],[16,2,1,"","add_items"],[16,2,1,"","has_item"],[16,2,1,"","remove_item"]],"synapseclient.Entity":[[16,2,1,"","create"],[16,2,1,"","has_key"],[16,2,1,"","keys"],[16,2,1,"","local_state"]],"synapseclient.EntityViewSchema":[[16,2,1,"","set_entity_types"]],"synapseclient.PartialRowset":[[16,2,1,"","from_mapping"]],"synapseclient.SubmissionStatus":[[16,2,1,"","json"]],"synapseclient.Synapse":[[16,2,1,"","clear_download_list"],[16,2,1,"","createColumns"],[16,2,1,"","createStorageLocationSetting"],[16,2,1,"","create_external_s3_file_handle"],[16,2,1,"","create_s3_storage_location"],[16,2,1,"","create_snapshot_version"],[16,2,1,"","delete"],[16,2,1,"","deleteProvenance"],[16,2,1,"","downloadTableColumns"],[16,2,1,"","findEntityId"],[16,2,1,"","get"],[16,2,1,"","getAnnotations"],[16,2,1,"","getChildren"],[16,2,1,"","getColumn"],[16,2,1,"","getColumns"],[16,2,1,"","getConfigFile"],[16,2,1,"","getEvaluation"],[16,2,1,"","getEvaluationByContentSource"],[16,2,1,"","getEvaluationByName"],[16,2,1,"","getMyStorageLocationSetting"],[16,2,1,"","getPermissions"],[16,2,1,"","getProjectSetting"],[16,2,1,"","getProvenance"],[16,2,1,"","getSubmission"],[16,2,1,"","getSubmissionBundles"],[16,2,1,"","getSubmissionStatus"],[16,2,1,"","getSubmissions"],[16,2,1,"","getTableColumns"],[16,2,1,"","getTeam"],[16,2,1,"","getTeamMembers"],[16,2,1,"","getUserProfile"],[16,2,1,"","getWiki"],[16,2,1,"","getWikiAttachments"],[16,2,1,"","getWikiHeaders"],[16,2,1,"","get_annotations"],[16,2,1,"","get_download_list"],[16,2,1,"","get_download_list_manifest"],[16,2,1,"","get_membership_status"],[16,2,1,"","get_sts_storage_token"],[16,2,1,"","get_team_open_invitations"],[16,2,1,"","invalidateAPIKey"],[16,2,1,"","invite_to_team"],[16,2,1,"","is_certified"],[16,2,1,"","login"],[16,2,1,"","logout"],[16,2,1,"","md5Query"],[16,2,1,"","move"],[16,2,1,"","onweb"],[16,2,1,"","printEntity"],[16,2,1,"","remove_from_download_list"],[16,2,1,"","restDELETE"],[16,2,1,"","restGET"],[16,2,1,"","restPOST"],[16,2,1,"","restPUT"],[16,2,1,"","sendMessage"],[16,2,1,"","send_membership_invitation"],[16,2,1,"","setAnnotations"],[16,2,1,"","setEndpoints"],[16,2,1,"","setPermissions"],[16,2,1,"","setProvenance"],[16,2,1,"","setStorageLocation"],[16,2,1,"","set_annotations"],[16,2,1,"","store"],[16,2,1,"","submit"],[16,2,1,"","tableQuery"],[16,2,1,"","updateActivity"],[16,2,1,"","uploadFileHandle"]],"synapseclient.Wiki":[[16,2,1,"","deleteURI"],[16,2,1,"","getURI"],[16,2,1,"","json"],[16,2,1,"","postURI"],[16,2,1,"","putURI"],[16,2,1,"","update_markdown"]],"synapseclient.activity":[[0,1,1,"","Activity"]],"synapseclient.activity.Activity":[[0,2,1,"","executed"],[0,2,1,"","used"]],"synapseclient.annotations":[[1,1,1,"","Annotations"]],"synapseclient.annotations.Annotations":[[1,2,1,"","__init__"]],"synapseclient.client":[[2,2,1,"","login"]],"synapseclient.core":[[12,0,0,"-","utils"],[13,0,0,"-","version_check"]],"synapseclient.core.upload":[[7,0,0,"-","multipart_upload"]],"synapseclient.core.upload.multipart_upload":[[7,3,1,"","_multipart_upload"],[7,3,1,"","multipart_upload_file"],[7,3,1,"","multipart_upload_string"],[7,3,1,"","shared_executor"]],"synapseclient.core.utils":[[12,3,1,"","as_url"],[12,3,1,"","caller_module_name"],[12,3,1,"","concrete_type_of"],[12,1,1,"","deprecated_keyword_param"],[12,3,1,"","download_file"],[12,3,1,"","equal_paths"],[12,3,1,"","extract_filename"],[12,3,1,"","extract_prefix"],[12,3,1,"","extract_synapse_id_from_query"],[12,3,1,"","extract_user_name"],[12,3,1,"","extract_zip_file_to_directory"],[12,3,1,"","file_url_to_path"],[12,3,1,"","find_data_file_handle"],[12,3,1,"","format_time_interval"],[12,3,1,"","from_unix_epoch_time"],[12,3,1,"","from_unix_epoch_time_secs"],[12,3,1,"","get_properties"],[12,3,1,"","guess_file_name"],[12,3,1,"","id_of"],[12,3,1,"","is_base64_encoded"],[12,3,1,"","is_date"],[12,3,1,"","is_in_path"],[12,3,1,"","is_json"],[12,3,1,"","is_same_base_url"],[12,3,1,"","is_synapse_id"],[12,3,1,"","is_url"],[12,3,1,"","itersubclasses"],[12,3,1,"","make_bogus_binary_file"],[12,3,1,"","make_bogus_data_file"],[12,3,1,"","md5_for_file"],[12,3,1,"","normalize_path"],[12,3,1,"","normalize_whitespace"],[12,3,1,"","printTransferProgress"],[12,3,1,"","query_limit_and_offset"],[12,3,1,"","snake_case"],[12,3,1,"","threadsafe_generator"],[12,1,1,"","threadsafe_iter"],[12,3,1,"","to_list"],[12,3,1,"","to_unix_epoch_time"],[12,3,1,"","to_unix_epoch_time_secs"],[12,3,1,"","topolgical_sort"],[12,3,1,"","touch"],[12,3,1,"","unique_filename"]],"synapseclient.core.version_check":[[13,2,1,"","check_for_updates"],[13,2,1,"","release_notes"]],"synapseclient.entity":[[5,1,1,"","DockerRepository"],[5,1,1,"","Entity"],[5,1,1,"","File"],[5,1,1,"","Folder"],[5,1,1,"","Link"],[5,1,1,"","Project"]],"synapseclient.evaluation":[[6,1,1,"","Evaluation"],[6,1,1,"","Submission"],[6,1,1,"","SubmissionStatus"]],"synapseclient.evaluation.Evaluation":[[6,2,1,"","__init__"]],"synapseclient.evaluation.Submission":[[6,2,1,"","__init__"]],"synapseclient.evaluation.SubmissionStatus":[[6,2,1,"","__init__"]],"synapseclient.table":[[9,1,1,"","Column"],[9,1,1,"","CsvFileTable"],[5,1,1,"","EntityViewSchema"],[9,1,1,"","Row"],[9,1,1,"","RowSet"],[9,1,1,"","RowSetTable"],[5,1,1,"","Schema"],[9,3,1,"","Table"],[9,1,1,"","TableAbstractBaseClass"],[9,1,1,"","TableQueryResult"],[9,3,1,"","as_table_columns"],[9,3,1,"","build_table"]],"synapseclient.table.Column":[[9,2,1,"","__init__"]],"synapseclient.table.CsvFileTable":[[9,2,1,"","asDataFrame"],[9,2,1,"","from_table_query"],[9,2,1,"","iter_row_metadata"],[9,2,1,"","setColumnHeaders"]],"synapseclient.table.Row":[[9,2,1,"","__init__"]],"synapseclient.table.RowSet":[[9,2,1,"","__init__"]],"synapseclient.table.RowSetTable":[[9,2,1,"","iter_row_metadata"]],"synapseclient.table.TableAbstractBaseClass":[[9,1,1,"","RowMetadataTuple"],[9,2,1,"","iter_row_metadata"]],"synapseclient.table.TableAbstractBaseClass.RowMetadataTuple":[[9,4,1,"","row_etag"],[9,4,1,"","row_id"],[9,4,1,"","row_version"]],"synapseclient.table.TableQueryResult":[[9,2,1,"","asDataFrame"],[9,2,1,"","iter_row_metadata"],[9,2,1,"","next"]],"synapseclient.team":[[10,1,1,"","Team"],[10,1,1,"","TeamMember"],[10,1,1,"","UserGroupHeader"],[10,1,1,"","UserProfile"]],"synapseclient.wiki":[[15,1,1,"","Wiki"]],"synapseclient.wiki.Wiki":[[15,2,1,"","__init__"]],"synapseutils.copy_functions":[[20,3,1,"","changeFileMetaData"],[20,3,1,"","copy"],[20,3,1,"","copyFileHandles"],[20,3,1,"","copyWiki"]],"synapseutils.describe_functions":[[20,3,1,"","describe"]],"synapseutils.migrate_functions":[[20,1,1,"","MigrationResult"],[20,3,1,"","index_files_for_migration"],[20,3,1,"","migrate_indexed_files"]],"synapseutils.migrate_functions.MigrationResult":[[20,2,1,"","as_csv"],[20,2,1,"","get_counts_by_status"],[20,2,1,"","get_migrations"]],"synapseutils.monitor":[[20,3,1,"","notifyMe"],[20,3,1,"","with_progress_bar"]],"synapseutils.sync":[[20,3,1,"","generateManifest"],[20,3,1,"","generate_sync_manifest"],[20,3,1,"","readManifestFile"],[20,3,1,"","syncFromSynapse"],[20,3,1,"","syncToSynapse"]],"synapseutils.walk_functions":[[20,3,1,"","walk"]],synapseclient:[[16,1,1,"","Activity"],[16,1,1,"","Annotations"],[16,1,1,"","Column"],[16,1,1,"","Dataset"],[16,1,1,"","DockerRepository"],[16,1,1,"","Entity"],[16,1,1,"","EntityViewSchema"],[16,1,1,"","EntityViewType"],[16,1,1,"","Evaluation"],[16,1,1,"","File"],[16,1,1,"","Folder"],[16,1,1,"","Link"],[16,1,1,"","MaterializedViewSchema"],[16,1,1,"","PartialRowset"],[16,1,1,"","Project"],[16,1,1,"","Row"],[16,1,1,"","RowSet"],[16,1,1,"","Schema"],[16,1,1,"","Submission"],[16,1,1,"","SubmissionStatus"],[16,1,1,"","SubmissionViewSchema"],[16,1,1,"","Synapse"],[16,3,1,"","Table"],[16,1,1,"","Team"],[16,1,1,"","TeamMember"],[16,1,1,"","UserGroupHeader"],[16,1,1,"","UserProfile"],[16,1,1,"","Wiki"],[0,0,0,"-","activity"],[1,0,0,"-","annotations"],[16,3,1,"","as_table_columns"],[16,3,1,"","build_table"],[16,3,1,"","check_for_updates"],[2,0,0,"-","client"],[5,0,0,"-","entity"],[6,0,0,"-","evaluation"],[16,3,1,"","login"],[16,3,1,"","release_notes"],[9,0,0,"-","table"],[10,0,0,"-","team"],[15,0,0,"-","wiki"]],synapseutils:[[20,0,0,"-","copy_functions"],[20,0,0,"-","describe_functions"],[20,0,0,"-","migrate_functions"],[20,0,0,"-","monitor"],[20,0,0,"-","sync"],[20,0,0,"-","walk_functions"]]},objnames:{"0":["py","module","Python module"],"1":["py","class","Python class"],"2":["py","method","Python method"],"3":["py","function","Python function"],"4":["py","attribute","Python attribute"]},objtypes:{"0":"py:module","1":"py:class","2":"py:method","3":"py:function","4":"py:attribute"},terms:{"0":[2,6,8,9,12,18,20],"00":18,"000":18,"01":[16,18],"02":[16,18],"024":18,"03":[16,18],"04":[12,16,18],"05":16,"06":[12,16],"07":16,"08":16,"09":16,"0x400":17,"1":[0,2,3,6,9,11,12,16,18,20],"10":[7,16,18],"100":[2,9,12,16],"1000":[8,9,12,16],"1005":17,"100kb":8,"1013":17,"1018":17,"1021":17,"1024":17,"1027":17,"1031":17,"1032":17,"1033":17,"1036":17,"1039":17,"1041":17,"1048576":12,"1049":17,"1053":17,"1056":17,"1058":17,"1059":17,"1063":17,"1068":17,"1070":17,"1072":17,"1073":17,"1074":17,"1075":17,"1076":17,"1078":17,"1080":17,"1082":17,"1084":17,"1085":17,"1087":17,"1088":17,"1090":17,"1096":17,"1097":17,"1099":17,"11":[16,18],"1102":17,"1103":17,"1104":17,"1109":17,"1110":17,"1111":17,"1112":17,"1113":17,"1114":17,"1118":17,"1119":17,"1120":17,"1123":17,"1125":17,"1128":17,"1129":17,"1130":17,"1134":17,"1135":17,"1136":17,"1138":17,"1141":17,"1143":17,"1145":17,"1146":17,"1150":17,"1156":17,"1158":17,"1159":17,"1161":17,"1163":17,"1165":17,"1167":17,"1169":17,"1172":17,"1173":17,"1174":17,"1175":17,"1176":17,"1184":17,"1188":17,"1189":17,"1193":17,"1196":17,"1197":17,"11ea":1,"12":[16,18],"1204":17,"1205":17,"1207":17,"1209":17,"1212":17,"1219":17,"122":1,"1221":17,"1224":17,"1226":17,"123":[2,16,20],"1234":[1,20],"12345":[8,9,18],"1234567":[2,16],"1235":17,"1237":17,"12600":9,"126000":18,"1267":17,"1268":17,"13":[16,18],"1415":20,"142":17,"14g":17,"15":16,"154":17,"1543":9,"1558":9,"1577":9,"16":16,"167":17,"168":17,"17":16,"1732":18,"1743":18,"179":17,"18":16,"180":17,"1809":18,"187":17,"19":16,"190":17,"1901877":[6,16],"195":17,"1956":9,"1957":9,"1958":9,"1970":12,"198":17,"2":[0,2,8,9,11,12,16,18,20],"20":[2,9,16,18],"20000":9,"20001":[9,18],"2005090":[2,16],"201001":9,"2012":12,"2016":16,"2017":16,"2018":16,"2019":16,"2020":16,"20200":[9,18],"202001":9,"2021":16,"2022":16,"2023":16,"203001":9,"204001":9,"2097152":12,"21":8,"22":18,"224":17,"226":17,"23":[16,18],"235":17,"253":17,"261":17,"267":17,"270":17,"271":17,"272":17,"274":17,"28":16,"29":16,"297":17,"2mb":17,"3":[2,9,18,20],"300":[2,16],"30033":[9,18],"301":17,"304":17,"308":17,"309":17,"30999":[9,18],"31":16,"315":17,"32":18,"331":17,"332154":1,"337":17,"343":17,"34345":20,"344":17,"346":17,"347":17,"349":17,"350":17,"351":17,"352":17,"353":17,"356":17,"357":17,"358":17,"360":17,"361":17,"362":17,"363":17,"366":17,"37":12,"370":17,"371":17,"380":17,"381":17,"382":17,"383":17,"384":17,"387":17,"388":17,"389":17,"390":17,"391":17,"393":17,"396":17,"397":17,"399":17,"4":[3,9,16,20],"400":17,"4001":9,"402":17,"40256475":1,"403":17,"404":17,"40444":[9,18],"407":17,"408":17,"409":17,"41000":9,"412":17,"413":17,"41444":[9,18],"415":17,"416":17,"418":17,"419":17,"421":17,"422":17,"423":17,"424":17,"425":17,"426":17,"427":17,"428":17,"429":17,"431":17,"435":17,"437":17,"438":17,"442":17,"443":17,"450":17,"451":17,"454":17,"456":[17,18],"461":17,"463":17,"464":17,"465":17,"468":17,"46e4":[2,16],"47":1,"470":17,"471":17,"472":17,"473":17,"475":17,"48":17,"482":17,"483":17,"484":17,"486":17,"487":17,"488":17,"489":17,"491":17,"494":17,"49508":20,"496":17,"4962559f090f":[2,16],"499":17,"5":[2,11,12,16,20],"50":[9,16,17],"500":17,"504":17,"506":17,"508":17,"511":17,"512":17,"51234":[9,18],"515":17,"516":17,"517":17,"518":17,"519":17,"521":17,"525":17,"526":17,"53":17,"535":17,"536":17,"537":17,"539":17,"54":17,"54321":8,"545":17,"54567":[9,18],"546":17,"555":17,"558":17,"562":17,"566":17,"569":17,"572":17,"573":17,"576949":12,"577":17,"578":17,"581":17,"582":17,"583":17,"590":17,"594":17,"595":17,"597":17,"5mb":7,"6":[16,18],"600":[2,16],"603":17,"605":17,"608":17,"612":17,"61234":[9,18],"617":17,"627477":1,"63":17,"638":17,"646":17,"647":17,"654":17,"658":17,"66":15,"669":17,"673":17,"680":17,"682":17,"683":17,"68686":[9,18],"688":17,"689":17,"692":17,"693":17,"694":17,"6fb3":1,"7":16,"706":17,"71":20,"726":17,"728":17,"729":17,"735":17,"743":17,"744":17,"750":17,"758":17,"759":17,"760":17,"766":17,"770":17,"772":17,"776":17,"777":17,"783":17,"788":17,"790":17,"795":17,"796":17,"797":17,"798":17,"799":17,"7bdb83e9":[2,16],"8":[5,16],"802":17,"804":17,"805":17,"806":17,"807":17,"810":17,"812":17,"814":17,"815":17,"819":17,"822":17,"823":17,"824":17,"829":17,"840":17,"846":17,"847":17,"848":17,"849":17,"851":17,"852":17,"855":17,"856":17,"858":17,"860":17,"863":17,"864":17,"866":17,"870":17,"873":17,"881":17,"885":17,"888":17,"89":17,"9":[1,16,18],"907":17,"909":17,"910":17,"913":17,"916":17,"917":17,"919":17,"920":17,"926":17,"927":17,"929":17,"948":17,"959":17,"960":17,"9614543":16,"962":17,"972":17,"974":17,"98765":8,"9876543":17,"987a":[2,16],"989":17,"99":6,"992":17,"993":17,"997":17,"999":17,"9cb6d0d8d984":1,"abstract":9,"boolean":[9,12,16,17,20],"break":[11,17],"byte":[7,12,17,20],"case":[0,2,5,8,9,12,16,17,18,20],"class":[0,2,5,6,9,10,12,14,16,17,18,20],"default":[2,3,5,8,9,11,12,13,16,17,20],"do":[1,3,4,5,8,9,16,17],"export":[2,4,8,16],"final":[2,6,16],"float":[12,16],"function":[2,4,5,7,8,9,16,17,18,20],"import":[1,2,4,5,6,8,9,11,14,15,17,18,20],"int":[1,2,3,7,12,16,17],"long":[3,16,17,20],"new":[2,3,5,8,9,12,14,16,20],"null":18,"public":[2,16,17,18],"return":[2,3,5,6,7,8,9,12,16,17,18,20],"short":[0,6,10,16],"switch":[2,16,17],"throw":[12,17],"true":[0,2,3,4,5,7,8,9,10,12,14,16,17,18,20],"try":[1,2,5,7,9,12,16,17],"while":[2,8,16,17,18,20],A:[0,1,2,3,4,5,6,9,10,12,14,15,16,17,18,20],And:18,As:[5,8,17,20],At:[8,18],BE:[2,16],By:[2,11,16],For:[0,1,2,3,4,5,9,11,13,15,16,17,18,19,20],If:[0,2,3,4,5,8,9,11,12,16,17,18,20],In:[0,1,2,3,4,5,9,10,16,17,18,20],Is:16,It:[0,5,9,11,12,16,17,20],Its:16,NOT:[2,16],No:[2,3,16,17,20],Not:17,OR:[2,16],On:[2,16,17],One:[2,5,16,20],Or:[4,6,16],That:[2,16],The:[0,2,3,4,5,6,8,9,10,11,12,14,16,17,18,19,20],There:[4,8,16,17],These:[5,8,9,16,17,18,20],To:[0,2,4,5,6,8,9,11,14,16,17,18,20],WILL:[2,16],Will:[3,12],With:9,_:7,__dict__:5,__init__:[1,6,9,15,17],__name__:12,_dev_version_url:[13,16],_entity_type_to_class:17,_getrawannot:[2,16],_list:[9,16,17],_multipart_upload:7,_seen:12,_start_multipart_upload:7,_synapseutils_:17,_version_url:[13,16],a50a:[2,16],abc:[12,17],abil:[14,17],abl:[5,16,17,19],abort:17,about:[2,9,10,11,16,17,20],abov:[8,15,18,20],abraham:18,absent:[2,16],absolut:12,acceler:17,accept:[0,2,3,6,16,17,18,20],access:[1,2,3,4,5,6,8,12,17,20],access_key_id:8,accessapprov:17,accessrequir:17,accessrequirementunfulfil:17,accesstyp:[2,16,18],accident:17,accord:20,account:[2,16,17],acl:[2,6,8,16,17,18],across:[2,5,9,16],act:[0,18],action:17,activ:[2,3,11,16,17,18,20],activest:12,activitydescript:[0,2,16,20],activitynam:[0,2,16,20],actual:[5,9,12,17,20],acycl:12,ad:[1,2,3,4,5,8,9,11,16,17,18,20],adapt:12,add:[0,2,5,8,9,11,14,16,17,18,19,20],add_fold:[16,17],add_item:[16,17],addannotationcolumn:[5,9,16,17],addcolumn:9,adddefaultviewcolumn:[5,9,14,16,18],addit:[0,1,2,3,5,8,16,17,20],addition:17,address:[2,10,16,17],adjust:17,administr:[10,16],advantag:17,affili:[10,16],after:[2,5,9,12,16,17,19,20],again:[8,9],against:[8,12,17],aka:[2,16],album:9,algorithm:[0,20],alia:[3,9],align:[9,15,16],all:[2,3,5,8,9,12,14,16,17,18,20],allfil:20,allow:[2,4,6,9,14,15,16,17,18,20],along:[2,3,16,17],alreadi:[2,3,5,8,12,16,17,18,20],already_migr:20,also:[0,1,2,4,5,8,9,11,15,16,17,18,20],alter:8,altern:[0,4,8,9,13,16,17,18],alwai:[2,5,11,16,17,20],amazon:[2,16,17],amazonaw:[2,16],ambigu:5,amount:[2,16],an:[1,2,3,4,5,6,7,9,10,12,15,16,17,18,20],analys:16,analysi:[2,16,18],anandolog:12,ani:[0,2,3,4,5,6,7,8,9,11,16,17,20],anno:[2,16,17],annot1:20,annot2:20,annot:[2,6,9,17,20],anonym:17,anoth:[1,8,9,16,19],answer:[2,16],api:[2,3,8,9,17,18],apikei:[2,4,16,17],appear:[3,9,12,16,17],append:[9,12,16],appli:[0,2,8,16,17,18],applic:[2,4,5,16,18,20],appropri:[2,3,9,16,17],approv:[2,10,16],appveyor:17,apt:[2,16,19],ar:[0,1,2,3,4,5,6,7,8,9,10,11,12,13,15,16,17,18,19,20],arbitrari:[1,2,12,16],aren:[17,18],arg:[5,8,9,16,17,18],argument:[1,2,4,7,8,9,16,17,20],around:[2,12,16],arrai:[2,9,16],articl:[5,8,18],artist:9,as_csv:20,as_table_column:[9,16,17],as_url:12,asc:[2,16],ascii:[2,16],asdatafram:[9,14,16,17,18],asdf:[2,16,17],asdfasdfasdf:17,assai:11,assertionerror:17,assign:[1,16],assist:20,associ:[2,5,6,8,9,10,16,18,20],associateobjectid:20,associateobjecttyp:20,assum:[11,18],async:17,asynchron:[2,16,17],atom:[5,9,16],attach:[1,2,3,15,16,17,18,20],attempt:[2,16,20],attribut:[1,2,14,16,17],authendpoint:[2,16],authent:[2,3,4,16,17,18],author:[2,16],authtoken:[2,4,16,17],auto:17,autom:17,automat:[2,3,5,9,11,16,17,18,20],avail:[3,8,16,17,18,19],avoid:[3,5,11,18,20],aw:[2,3,8,16,17],awai:17,awesom:[0,16],aws_access_key_id:[2,8,16],aws_secret_access_kei:8,aws_session_token:8,b:[9,12,16,18],back:[2,6,8,9,12,16,17],backend:17,backoff:17,backslash:[2,16],badg:17,bah:[9,18],bam:11,bang:12,banner:[2,16],bar1:16,bar2:16,bar:[1,2,3,5,8,12,16,17,18,20],barcol:16,base64:[2,12,16],base:[2,5,9,12,14,16,17,20],base_kei:[2,8,16],basenam:[5,20],bash:[2,3,16],basi:8,bat:12,batch:[2,16,17,20],baz:[2,16,17,18,20],bb0a:1,bday_column2:9,bday_column:9,bearer:[2,16],becaus:[2,11,16,17],becom:[1,3,16,17,20],been:[2,8,12,16,17,20],befor:[2,4,8,9,12,16,17,19,20],began:12,behalf:[3,16],behavior:[11,17,20],behind:15,being:[2,5,8,16,17,20],belong:[2,5,9,12,15,16],below:[17,20],benefactor:[2,16],best:1,better:[15,17],bettter:17,between:[2,5,16,17,18,20],binari:[12,16,19],bionetwork:[0,16],birthdai:[9,18],birthday2:9,bit:9,black:17,blank:17,block_siz:12,blog:12,blp:9,blue:[2,9,16],bnk:[9,18],board:[2,16],bodi:[2,16],bogu:12,bool:[2,7,12,16,17,20],both:[0,1,2,5,12,13,16,20],boto3:17,boto:[2,3,8,16],botocor:17,branch:[16,17,18],broken:17,browsabl:16,browser:[2,16],bucket:[2,8,16,17],bucket_nam:[2,8,16],bugfix:17,build:[0,2,3,6,9,12,16,17,18,19],build_tabl:[9,16,17,18],built:[16,19],builtin:17,bulk:[2,14,16,17],bulkfiledownloadrequest:17,bundl:[2,12,16,17],burrel:9,burrellwarholbn1543:9,bypass:[2,3,16,20],c:[2,3,9,12,16,18],cach:[2,3,5,16,17,20],cache_root_dir:[2,16,17],cachedir:17,cachemap:17,calcul:[2,12,16,17],call:[0,2,3,5,7,8,9,10,12,16,17,20],callback:12,caller:[2,12,16,20],caller_module_nam:12,calling_modul:12,camel:[16,17],camelcas:12,can:[0,1,2,3,4,5,6,7,8,9,10,11,14,15,16,17,18,20],cancancel:[6,16],cancel:[2,6,16],cancelrequest:[6,16],cannot:[3,15,16,17],canpublicjoin:[10,16],capabl:8,care:16,cart:[3,17],cat:17,catalog:9,caus:[11,17],cd:16,cell:[16,17],certain:[4,8,17],certif:17,certifi:[2,16],challeng:[2,3,6,16,18],chang:[2,3,6,8,10,14,16,17,18,20],change_permiss:[2,16],changefilemetadata:[5,17,20],changeset:9,charact:[2,3,9,12,16,18],character:16,charset:[5,16],check:[2,3,6,13,16,17],check_for_upd:[13,16],checkout:16,checksum:[2,16],child:17,children:[2,8,16,17],chmod:[2,16],choic:[3,5,9,15,16],choos:[2,4,16,20],chosen:[10,16],chromosom:[9,18],chunckedqueri:17,chunk:[7,17],chunkedencodingerror:17,chunkedqueri:17,chunkencodingerror:17,circumst:8,cl:12,clarifi:[17,20],classmethod:[9,16,17],claus:16,clean:[12,17],cleanup:17,clear:[2,16],clear_download_list:[2,16],cli:[8,16,17],click:17,client:[1,4,5,7,8,10,11,12,13,17,18,20],clone:16,close:[2,6,16,17,18],cloud:16,cluster:[0,17,18],clustered_sampl:0,cmd:[2,3,16],code:[0,2,4,5,7,8,12,16,17,20],code_repo:[0,16],codeent:[0,16],codeql:17,col:[5,9,16,18],col_id:20,col_nam:20,collabor:[16,17],collaps:[2,16,18],collect:[1,6,9,12,17],collection_d:1,collid:5,collis:[2,5,16,20],colon:20,coltran:9,coltranebluetrain:9,column1:[12,17,20],column2:[12,17,20],column3:[17,20],column:[2,3,5,14,16,17,18,20],column_nam:16,columns_to_stor:17,columntyp:[5,9,14,16,17,18],com:[0,2,12,16],combin:[0,2,9,16],come:[2,9,16],comma:[2,12,16],command:[2,4,11,16,17,18,20],comment:[2,11,16,17],common:[0,8,12,20],commun:[2,16,19],compani:[10,16],companion:16,compar:[12,17],compat:[2,4,8,16,17,18],competit:6,compil:[2,16,17,19],complet:[1,2,3,5,6,8,12,16,17,18,20],complic:17,compon:16,compos:16,concret:[12,20],concrete_type_of:12,concretetyp:16,concurr:[7,9,10,16,17],condit:17,conduct:[8,17],config:[2,16,17],configpath:[2,3,16],configur:[2,3,4,7,8,16,17,18,20],confirm:[2,3,8,16,20],conflict:[0,2,5,9,16],confluenc:17,conform:9,confus:[5,16,17],conjunct:[2,16],connect:[2,3,17,18,20],connection2:18,consid:[2,4,16],consist:[9,17],consol:[3,16,17,18],consolid:17,constrain:[9,16],construct:[2,16,18],constructor:[1,5,10,16,17,20],contact:[2,16,17],contain:[0,2,3,5,8,9,10,12,15,16,17,18,20],content:[2,3,5,6,8,9,12,14,15,16,17,20],content_disposition_head:12,content_typ:[7,12],contentsourc:[6,16,18],contenttyp:[2,5,7,16,17,20],context:[6,7],continu:[3,9,20],continue_on_error:[3,8,20],contribut:[2,16,17],contributor:[14,18],control:[2,3,5,6,8,10,18],conveni:[2,16,17],convert:[9,12,16,17,18,20],convert_to_datetim:[9,17],copi:[1,3,5,8,16,17],copy_funct:[5,20],copyfilehandl:[17,20],copywiki:[17,20],core:[7,12],correct:17,correctli:17,correspond:[2,9,16],cosmet:[16,17],could:[6,20],couldn:17,count:[17,20],cover:[5,9],cover_fil:9,covers_dir:9,cp:8,cpu:17,crawl:20,creat:[1,2,5,6,9,11,12,16,17,18,20],create_external_s3_file_handl:[2,8,16],create_s3_storage_loc:[2,8,16],create_snapshot_vers:[2,16,17],create_table_snapshot:[8,20],createcolumn:[2,16],created_on:[2,16],createdon:[5,9,16],createent:17,createorupd:[2,16],createstoragelocationset:[2,16],creation:[2,16,17,20],creationd:1,creator:[5,16],credenti:[2,3,16,17],credit:[2,16],cryptic:12,cryptographi:17,csv:[2,3,8,9,16,17,20],csv_log_path:[3,8],csvfilet:[9,16,17],csvtablefil:17,ctrl:12,current:[2,9,10,12,13,16,17,18],current_fram:12,currentfram:12,custom:[2,8,9,16,17],d:[9,12,16,18],daemon:[2,16],danger:17,dash:[16,17],data:[2,3,5,6,8,12,14,15,17,20],data_fold:16,data_r_u:[2,16],databas:[8,20],datafilehandleid:[5,8,12,16,17],datafold:18,datafram:[9,16,17,20],dataset:[2,3,16,17,20],dataset_item:[16,17],datasetitem:16,datatyp:17,date:[3,5,9,10,12,16,17,18],date_list:17,datetim:[1,9,12,17],db:[8,20],db_path:[3,8,20],dbu:[2,16],dd:18,debian:19,debug:[2,3,16,17],decor:[12,15,17,20],deem:3,deep:17,def:20,default_filenam:12,defaultvalu:[9,16],defin:[1,2,4,5,9,10,12,14,15,16,17,20],defining_sql:16,definingsql:[16,17],delay_load:18,delet:[2,15,16,17],deleteent:17,deleteproven:[2,16],deleterow:17,deleteuri:16,delimit:[12,16,20],deliv:[2,16],demonstr:14,depend:[5,9,16,17,18],deprec:[2,3,4,5,9,12,16,17],deprecated_keyword_param:12,depth:12,deriv:[2,3,12,16,17],desc:[2,16],descend:3,describ:[2,3,8,9,10,11,16,17,18],describe_funct:20,descript:[0,2,3,5,6,8,9,10,15,16,17,18,20],description_file_path:3,descriptionfil:[3,17],design:17,desir:[3,5,11,16],dest_file_nam:7,dest_storage_location_id:[3,8,20],destin:[2,3,7,8,16,17,20],destinationid:[3,20],destinationsubpageid:20,destruct:[2,16],detail:[2,3,6,9,12,16,17,18,20],detect:[2,10,12,16],determin:[2,3,9,12,16,20],dev:[2,16,17,19],develop:[0,13,16,17,19],devot:7,df:[9,16],diagnos:3,dict:[1,2,9,12,16,20],dictionari:[0,1,2,3,5,12,16,17,20],differ:[2,3,5,7,9,11,16,17,18],dir:17,direct:[2,12,16,17],directli:[0,2,7,8,10,17,18],directori:[2,3,4,8,12,16,17,20],directory_path:20,dirnam:20,dirpath:20,disciplin:[10,16],discov:[5,9,16],discuss:18,disk:[8,17,20],displai:[2,3,5,6,9,16,17],display:12,disposit:12,distinct:5,distinguish:16,distribut:[11,17,19],divis:5,doc:[2,3,5,6,9,13,16,17,20],docker:[2,5,9,14,16,17,18],docker_tag:17,dockerhub:[5,16],dockerrepo:[2,16,20],dockerrepositori:[2,16,17],dockertag:[2,16],docstr:17,document:[1,2,3,8,9,17,18],doe:[2,9,16,17,18,20],doesn:17,doing_someth:20,don:[2,3,5,16,17],done:[5,9,14,16,20],donwload:17,dot:[5,12],doubl:[2,5,9,16,17],down:[7,17],download:[0,2,5,8,9,12,16,17,18,20],download_fil:12,downloada:20,downloadent:17,downloadfil:[2,11,16,20],downloadloc:[2,3,9,16,18],downloadtablecolumn:[2,9,16,17],downloadtablefil:17,drop:17,dry:3,dryrun:[3,8,20],dt:12,dtype:[9,17,20],dtype_2_tabletyp:17,due:[16,17,18],duplic:17,dure:[0,16,17],e:[0,2,5,8,9,10,11,12,16,17,18,20],each:[0,2,3,9,16,18,20],earli:17,easi:4,easiest:16,easili:[11,14,16],ecdsa:19,echo:[2,16],ed:16,edit:[14,17,20],effect:8,eid:3,either:[0,2,4,5,8,12,16,18,19],element:[9,16],email:[2,3,10,16,17,20],emit:12,emphas:[15,18],emploi:[10,16],empti:[2,8,16,17,20],enabl:[2,4,9,16,17],encapsul:2,encod:[2,12,16,17],encount:[8,17,20],encout:17,encrypt:[2,16],end:[5,7,9,12,16,17,18],endpoint:[2,3,16,17],endpointurl:[2,16],enforc:[5,17],ensur:[8,17,18],ensure_ascii:[2,16],entail:5,enter:4,entir:[2,5,16,17,20],entiti:[1,2,3,6,8,9,10,11,12,14,15,17,20],entity_id:[2,8,16],entity_parent_id:[2,16],entityexist:3,entityid:[2,3,6,9,16,17],entityid_list:17,entitymap:20,entitysubpageid:20,entitytyp:[2,16,20],entityview:[2,16,17,20],entityviewschema:[2,5,9,14,16,17,18],entityviewtyp:[5,9,14,16,17,18],entri:[6,16],enumer:[9,16],enumvalu:[9,16],environ:[2,16,17,18],eo:18,eol:17,epoch:18,equal:[2,12,16],equal_path:12,error:[0,3,5,8,9,16,17,20],escap:[2,3,16],escapecharact:[2,9,16],etag:[1,2,6,9,10,16,17],etc:[2,5,9,12,16,20],eval:18,evalid:[3,17],evaln:3,evalu:[2,3,17],evaluation_:18,evaluation_id:17,evaluation_in_progress:[2,16],evaluationid:[3,6,16],evaluationnam:3,even:[2,5,16,17,20],eventu:[2,7,16],everi:[2,10,16,17],everyth:20,exact:11,exampl:[0,1,2,3,5,8,9,11,12,14,15,16,17,18,19,20],example1:1,example2:1,example3:1,example_cod:11,example_fil:20,exceed:17,excel:0,excellent_data:0,except:[2,9,12,16,17,20],exclud:[12,16,20],excludetyp:[3,20],exclus:[2,3,16],exectu:20,execut:[0,2,3,6,8,16,17,18,20],executor:7,exercis:17,exhaust:17,exist:[2,3,5,8,9,12,13,16,17,18,20],exit:3,expand:17,expect:17,expir:[2,16,17],explanatori:17,explicit:[2,11,16],explicitli:[17,18],exponenti:17,expos:17,extens:17,extern:[2,5,16,17],external_sync:[2,16],externalfilehandl:[2,16],externalobjectstorag:[2,16],externals3storag:[2,16],externalstorag:[2,16],extra:[16,19,20],extraarg:8,extract:12,extract_filenam:12,extract_prefix:12,extract_synapse_id_from_queri:12,extract_user_nam:12,extract_zip_file_to_directori:12,f:[2,3,9,12,16,17,18,20],fail:[3,17],failur:[17,20],failurecod:20,fairli:9,fall:17,fals:[0,2,3,7,8,9,10,11,12,16,17,20],famili:[10,16],familiar:18,fanci:[2,16],fantast:[15,18],fast:17,faster:[9,17],favor:[4,17],favorit:[9,18],featur:[16,18],fetch:[2,3,11,16],few:[1,9,18,19],field:[0,2,5,6,9,10,12,16,17,20],figur:[12,15,17],file1:[14,18,20],file2:[14,18,20],file:[1,2,3,4,7,8,10,12,14,15,16,17,18,20],file_ent:[8,17,20],file_handl:[8,9],file_handle_id:[2,16],file_map:[2,16],file_path:[2,7,16],file_s:[2,16],file_to_upd:11,file_typ:[2,16],file_url_to_path:12,file_version_strategi:[3,8,20],fileannotations1:18,fileannotations2:18,fileent:[17,18,20],fileentityid:[2,16],filehandl:[2,9,12,15,16,17,20],filehandleendpoint:[2,16],filehandleid:[2,9,10,16],filenam:[5,7,8,12,15,17,20],filenameoverid:17,filenameoverrid:5,filepath1:18,filepath2:18,filepath:[9,12,18,20],filesystem:17,filetyp:11,fileview:17,fill:17,filter:[2,16,17],find:[2,4,16,17,20],find_data_file_handl:12,findentityid:[2,16,17],fine:16,finish:12,first:[2,4,5,8,9,10,11,12,14,16,17,18,20],firstnam:[10,16],fit:4,fitler:17,fix:5,flag:[2,3,16,17],flat:[1,16,20],flavor:9,folder:[2,3,9,14,16,17,18,20],folder_nam:[2,8,16],folderinsidezipifani:12,follow:[2,3,4,5,8,9,11,14,16,17,18,20],followlink:[2,3,5,16,20],foo1:16,foo2:16,foo:[1,2,3,5,6,8,9,12,16,17,18,20],foobar:[4,17,20],foobarbat:[5,16],foocol:16,foolist:18,foord:19,forc:[2,3,8,16,17,20],force_restart:7,forcevers:[2,11,16,17,20],foreign:[10,16],forenam:[10,16],forgetm:[2,16],form:[2,3,8,9,12,16],format:[2,3,5,6,9,12,16,17,18,20],format_time_interv:12,formatt:17,forward:[12,19],found:[2,5,8,16,17,18,20],fraction:17,frame:18,framework:17,fredcommo:[2,16],freds_profil:[2,16],free:19,frequent:[2,16],fresh:[2,16],from:[0,1,2,3,4,5,6,7,9,11,12,14,15,16,17,19,20],from_file_handle_id:20,from_map:[16,17],from_storage_location_id:20,from_table_queri:9,from_unix_epoch_tim:12,from_unix_epoch_time_sec:12,ftp:[2,16,17],full:[8,12,17],fulli:3,func:20,futur:[2,3,5,12,16,17,18],g:[0,2,5,8,9,11,12,16,17,18,20],gb:[7,12,17,20],gene:[9,18],gener:[0,2,3,4,7,8,9,12,16,17,18,20],generate_sync_manifest:20,generatemanifest:[17,20],genome_assembl:16,georg:18,get:[2,4,5,6,8,9,11,12,15,17,18,19,20],get_annot:[1,2,16,17,18],get_counts_by_statu:20,get_download_list:[2,16,17],get_download_list_manifest:[2,16],get_membership_statu:[2,16],get_migr:20,get_properti:12,get_sts_storage_token:[2,8,16],get_team_open_invit:[2,16],getannot:[2,14,16,17],getchildren:[2,12,16,17],getcolumn:[2,9,16,17],getconfigfil:[2,16],getent:17,getevalu:[2,6,16,18],getevaluationbycontentsourc:[2,6,16],getevaluationbynam:[2,6,16],getmystoragelocationset:[2,16],getpermiss:[2,6,16,18],getprojectset:[2,16],getproven:[2,16],getsubmiss:[2,6,16,17,18],getsubmissionbundl:[2,16,18],getsubmissionstatu:[2,6,16,18],gettablecolumn:[2,9,16],getteam:[2,16],getteammemb:[2,16],geturi:16,getuserprofil:[2,16,17],getwiki:[2,15,16,18],getwikiattach:[2,16],getwikihead:[2,15,16,17],gh:17,git:16,github:[0,16,17,20],githubusercont:0,give:[2,9,16,17],given:[1,2,3,5,9,10,12,16,17,20],glanc:11,glib:[2,16],global:18,gnarli:[0,16],gnome:[2,16],go:14,goal:9,good:[0,6,16],goog:[0,16],googl:[0,16],gotcha:1,grain:16,grant:[2,16],graph:[12,16],graphic:[15,16],greater:18,group:[2,10,16,18],guarante:[2,16],guess_file_nam:12,guid:16,h:[3,18],ha:[0,2,3,5,6,8,9,12,16,17,18,20],hack:[0,12,16,17],had:[9,17],halflif:[5,9,16],handl:[2,7,8,9,10,12,15,16,17,18,20],hang:17,hard_limit:12,has_item:16,has_kei:16,hash:[2,16],have:[0,1,2,3,4,5,8,9,11,16,17,18,20],head:16,header:[2,5,9,12,16,17,19],headless:[2,16],held:5,help:[12,13,16,17,18],helper:17,here:[0,2,8,9,15,16,17,18,20],hex_digit:18,hexadecim:[2,16],hg19:16,hh:18,hidden:17,hierarch:16,hierarchi:[17,20],higher:[16,17,20],hint:18,hold:[5,9,16],home:[2,4,8,16,17],host:[5,16,17],hostkei:17,hotfix:17,hous:17,how:[2,8,9,11,12,14,16,17,18,20],howev:[4,8,11,17],html:[2,3,5,6,9,16,20],http:[0,2,3,5,6,9,12,16,20],huge:20,hundr:20,hypothet:16,i:16,icon:[10,16],id:[0,1,2,3,5,6,7,8,9,10,12,14,15,16,17,18,20],id_of:12,idea:[0,6,16],identifi:[2,8,9,10,16,18],ie:[2,16,20],ifcollis:[2,16,20],ignor:[2,5,12,16,17],ignoredannotationcolumnnam:[5,9,16],illustr:[8,18],imag:[5,10,16,17],immedi:[9,16],immut:[2,6,9,16],impact:[8,17],implement:[3,7,8,12,17,18],implicit:11,improv:8,inaccess:[2,16],includ:[2,3,4,5,8,9,15,16,17,18,20],include_table_fil:[3,8,20],includeentityetag:17,includeentitytyp:[5,9,14,16,18],includerowidandrowvers:[2,9,16],includetyp:[2,16,17,20],inclus:[9,16],incompat:17,inconsist:17,incorrect:17,incorrectli:17,increas:17,increment:[2,16,17,20],independ:8,index:[2,3,8,9,16,17,20],index_col:9,index_files_for_migr:[8,17,20],indic:[2,6,7,12,16,17,20],individu:[8,16,17,20],industri:[10,16],info:8,inform:[3,8,9,10,11,15,17,18],ing:[5,16],inherit:[2,16],initi:[2,7,8,16],inlin:4,inner:9,input:[12,16,20],input_str:12,insert:17,insid:[0,4,16],inspect:[8,12,20],instal:[2,4,8,9,13,17],instanc:[2,8,16,18],instanti:18,instead:[2,4,8,16,17,20],instruct:[5,16,17,18],int64:[17,20],intact:3,integ:[5,9,16,17,18],integr:[16,17,18],integration_test_ent:17,intend:[12,18],intent:8,intention:17,interact:[3,8,16,18,20],interactic:20,interchang:5,interest:[2,16],interfac:[16,17,18,20],intern:[5,8,9,16,20],interpret:[18,20],interrupt:17,interv:[3,12,20],introduc:17,invalid:[2,6,9,16],invalidateapikei:[2,16],invit:[2,10,16,17],invite:[2,16],invite_to_team:[2,16],inviteeemail:[2,16],inviteeid:[2,16],invok:[8,12,17],involv:[2,8,9,16],io:17,is_base64_encod:12,is_certifi:[2,16,17],is_dat:12,is_in_path:12,is_json:12,is_same_base_url:12,is_synapse_id:12,is_url:12,isadmin:[10,16],isbyt:[12,20],isconsist:[2,9,16,17],ish:16,isindividu:[10,16],isn:[11,17],isol:14,isotop:[5,9,16],isrestrict:[2,16],issu:[9,16,17,18],item:[2,5,8,12,16,17,20],item_id:16,iter:[2,9,12,16,18,20],iter_row_metadata:9,itersubclass:12,its:[0,2,5,6,7,8,11,12,14,16,17,18,20],itself:[3,5,8,17,20],jan:12,java:16,jazz:9,jefferson:18,job:17,joe_hack:[0,16],john:9,join:[9,10,16,17],jpg:9,json:[2,3,5,12,16],jsondecodeerror:17,jupo:12,just:[15,16,17,20],k:16,kb:[12,20],keep:[2,3,8,15,16,17,20],kei:[1,2,3,5,8,9,10,12,16,17,20],kenni:9,keychain:4,keyerror:[5,17],keyr:[2,16,17],keyword:[1,2,7,8,12,16],know:[8,9,16,20],known:[2,8,16,20],kwallet:[2,16],kwarg:[1,2,5,6,9,10,15,16,20],l:3,label:[2,16,17],lambda:17,languag:9,larg:[7,8,17],largetext:[9,16,17],last:[10,16,20],lastnam:[10,16],lat_long:1,later:[2,9,12,16],latest:[2,3,13,16,17,20],lead:[2,16,17],leaderboard:[2,3,16],leav:[17,20],left:[2,16,17],legaci:4,len:[16,17],length:20,let:[9,14,15,16,18],letter:18,level:[16,20],leverag:[8,17],liabil:20,libdbu:[2,16],libnam:18,librari:[8,9,16,17,18,19],lieu:[2,16],life:[2,16,17],lighter:12,lightweight:[5,16],like:[1,2,3,4,5,6,9,16,17,20],limit:[2,3,8,9,12,16,17,18],limitsearch:[2,3,16],lincoln:18,line:[4,11,16,17,20],lineend:[2,9,16],linesep:[2,16],linestoskip:9,link:[2,3,6,8,9,10,14,16,17,20],lint:17,linux:[2,16,17],list:[0,2,5,8,9,10,12,15,16,17,18,20],list_of_fil:[2,16],liter:17,ll:[9,16],load:[2,9,12,16,18],loadent:17,local:[2,3,5,8,11,12,16,17,20],local_file_path:8,local_st:[5,9,16,17],localfilepath:12,locat:[1,2,3,5,10,11,16,17,20],lock:17,log:[2,3,4,8,16,17,20],login:[9,14,16,17,18,20],logo:[15,17],logout:[2,16],long_runtime_func:20,longer:17,look:[5,16,17],lookup:[2,16],loss:[2,16],lot:9,luck:9,m:[3,18],mac:[2,4,16],machin:[2,5,16],made:[17,18],mai:[2,3,4,6,8,9,12,16,17,18,19],main:17,major:17,make:[0,2,9,11,12,16,17,18],make_bogus_binary_fil:12,make_bogus_data_fil:12,manag:[5,7,16,17,18],mani:[12,16,18],manifest:[2,16,17,20],manifest_path:[17,20],manifestfil:20,manipul:[5,18],manual:[5,8,16,20],map:[1,2,5,9,12,16,20],markdown:[3,15,16,17,18],markdown_fil:16,markdownfil:[15,16],mass:[5,9,16],master:16,match:[12,17],materi:[16,17],materializedview:[2,16,17,20],materializedviewschema:[16,17],matrix:16,max:[2,16,17,20],max_thread:[7,17],maximum:[2,9,16],maximumlistlength:[9,16,17],maximums:[9,16,18],mayb:20,mb:[12,20],md5:[2,12,16,17],md5_fn:7,md5_for_fil:12,md5queri:[2,16],md:[13,16,17],me:[2,3,16,17],mean:[3,6,7,13,16,17,20],meant:12,measur:0,mechan:8,member:[2,5,10,16,17],membership:[2,10,16],membershipinvit:[2,16],membershiprequest:[2,16],membershipstatu:[2,16],memo:12,memoiz:17,memori:20,mention:[5,17],messag:[2,3,6,10,16,17,20],messageattach:20,messagebodi:[2,16],messagesubject:[2,16,20],met:19,meta:[8,18],metaclass:17,metadata:[1,2,3,5,8,10,11,16,17,20],meter:17,method:[0,2,4,6,8,12,16,17,18,20],michael:19,microsoft:19,midnight:12,midwai:17,might:[0,2,9,16],migrat:17,migrate_funct:20,migrate_indexed_fil:[8,17,20],migrationadmin:17,migrationresult:20,million:20,millisecond:[12,18],mime:[2,16],mimetyp:[2,16],min:[17,20],min_remaining_lif:[2,16],mingw:19,minim:[4,9],minimum:[2,7,16,20],minor:11,minut:[2,12,16],mirror:17,mishandl:17,miss:17,mission:[2,16],mitig:17,mix:17,mm:18,mmm:18,mmse:[6,16],mode:[3,17,20],model:[2,6,9,10,16,17,18,20],modifi:[2,3,5,9,12,14,16,17,20],modifiedbi:[5,9,16],modify_benefactor:[2,16],modul:[7,12,16,17,18],monitor:17,more:[1,3,8,9,10,11,14,15,17,18],more_gen:9,most:[2,3,5,8,9,11,12,16,17],mostli:[2,9,16,17],move:[2,3,8,16,17],ms:12,much:12,multi:[3,17],multi_thread:17,multipart:17,multipart_upload:[7,17],multipart_upload_fil:7,multipart_upload_str:7,multipl:[0,2,3,4,15,16,17,18],multithread:[3,17],must:[2,3,4,5,8,9,16,17,18,20],mutual:[2,16],my:[0,2,5,6,8,9,14,15,16,17,18],my_annot:1,my_fil:[5,20],my_funct:20,my_new_name_fil:20,my_newname_fil:5,my_personal_access_token:[4,17],my_profil:[2,16],my_project:1,my_queri:20,mydomain:[0,16],myown:[2,16],mytabl:[5,9,16],n:[2,8,9,12,16,17,18],name:[0,2,6,8,9,10,11,12,14,16,17,18,20],namedtupl:9,namespac:[5,18],narg:17,nativ:[2,16],necessari:[2,8,16,18],need:[2,4,5,7,8,9,12,16,17,18,19,20],neg:17,network:17,neutral:12,never:5,new_col_valu:16,new_fil:11,new_item:16,new_par:[2,16],new_row:9,new_vers:11,newcontenttyp:20,newer:[13,16,17,20],newfilenam:20,newk:9,newli:[14,17],newsynid:20,next:[8,9,12,17,18],nice:9,nicknam:[2,3,16],noforcevers:3,non:[2,8,12,16,17],none:[0,1,2,3,5,7,9,12,13,15,16,17,20],nor:17,normal:[1,5,11,20],normalize_path:12,normalize_whitespac:12,not_found:20,notat:5,note:[2,3,4,5,8,9,13,15,18],noth:[2,8,16,20],notif:[2,3,10,16],notifi:[17,20],notificationset:[10,16],notify_decor:20,notifym:[17,20],now:[0,1,4,8,9,11,15,17,18],number:[2,3,6,7,9,11,12,16,17,20],o:[3,8],oauth:17,obj:[2,12,16],object:[1,2,3,5,6,7,8,9,10,12,15,16,17,18,20],objectid:20,obtain:[4,8,17,20],occ:[10,16],occasion:17,occur:[8,17,20],odd:12,off:17,offici:[5,16],offset:[2,9,12,16,17,18],ok:4,old:[2,11,16,17,20],oldsynid:20,omit:[2,8,16],onc:[2,4,8,9,12,16,17,18,19],one:[1,2,3,4,5,6,8,14,16,18,20],ones:[2,9,16,17],onli:[2,3,4,5,8,9,11,12,16,17,18,20],onlin:16,onload:18,onto:8,ontolog:[0,16],onweb:[2,16,17,18],open:[2,3,4,6,12,16],openinvit:[2,16],openstack:[2,16],oper:[2,8,12,14,16,17,18],optimist:[9,10,16],option:[0,1,2,3,5,7,8,9,15,16,17,18,19,20],order:[2,8,11,12,16,17,18],ordinari:1,org:[2,3,4,5,6,9,10,12,16,17,20],origin:[3,16,20],originalqueryresult:16,os4:18,os:[2,4,5,9,16,19,20],other:[2,3,4,5,8,12,14,16,17,18,20],other_annot:1,otherwis:[2,8,9,12,16,18,20],our:[0,2,9,16,17,18],out:[10,12,16,17,20],outdat:17,output:[0,2,3,8,16,17,20],output_fil:3,output_format:[2,8,16],outsid:[7,17,20],over:[2,4,9,12,14,16,17,20],overload:[16,20],overwrit:[2,16,17,20],overwritten:17,own:[2,5,9,16,17,18,19],owner:[2,5,8,15,16,17,18],ownerid:[2,10,16],ownership:8,p:[3,16,17],packag:[12,16,17,18,20],page:[2,3,15,16,17,18,20],pagin:[2,16],paginatedresult:17,pair:[1,3,4],panda:[16,17,18,20],parallel:17,param:[2,7,9,12,16,20],paramet:[0,1,2,3,5,6,7,8,9,10,11,12,13,15,16,17,20],parameter:17,paramiko:[17,19],parellel:17,parent:[1,2,3,5,8,9,14,15,16,17,18,20],parent_id:20,parent_synapse_folder_id:8,parentid:[2,3,4,8,11,16,17,20],parentwikiid:[15,16],pars:17,part:[7,17],part_fn:7,part_siz:7,partial:16,partial_chang:16,partial_rowset:16,partialrow:[16,17],partialrowset:[16,17],particular:[2,6,16,18],particularli:8,pass:[0,2,3,4,7,8,11,12,16,17,18,20],password:[2,3,4,16,17,18],past:18,paste0:18,pat:16,path1:12,path2:12,path:[2,3,5,8,9,11,12,14,15,16,17,18,20],patient_id:[16,17],paus:17,payload:[2,16],pd:[9,16],peer:17,pend:[2,16],per:[7,8,20],perform:[2,3,8,16,17,20],period:[2,16],perm:18,permiss:[0,2,3,5,16,17,18],persist:5,person:[2,4,10,16,17],pick:8,pictur:[10,16],piecem:0,pin:17,pip3:16,pip:[2,8,16,17,18,19],pipe:17,pipelin:[6,16,18],pkgname:18,place:[2,3,16,17,20],plai:9,plain:[1,2,16,17],platform:[9,12,16,17],pleas:[2,4,5,8,9,11,14,16,17],plfm:17,plu:9,png:[5,15,16],point:[12,17,18],pool:17,popul:[2,9,12,16,17],popular:9,port:[5,16],portalendpoint:[2,16],posit:[10,16,17],possibl:[0,2,3,5,16],post:[2,9,16,17],postfix:[12,20],posturi:16,potenti:[5,16,20],powershel:[2,3,16],practic:[10,16],pre:[2,16,17],prebuilt:16,precaut:18,preced:5,predict:[6,16,18],prefer:[2,10,16],prefix:[2,12,16,20],preliminari:9,present:[1,5,8,16,17],presid:18,presign:17,presignedurl:17,pretti:[2,16],prevent:[9,17],preview:7,previou:[2,9,16,17,20],previous:[5,7,17,20],previouslytransf:12,previouslyupload:3,prez_birthdai:18,princip:[10,16],principalid:[2,16,18],print:[2,3,5,9,12,13,16,17,18,20],printabl:12,printent:[2,16],printprogress:12,printtransferprogress:12,prior:[4,17],prioriti:[4,17],privat:16,problem:[3,17],proce:8,proceed:8,process:[0,2,3,6,7,8,9,16,17,18,19],produc:0,product:[2,16],production_endpoint:[2,16],profil:[2,10,12,16],profilepicurefilehandleid:[10,16],program:[3,17],programat:[8,17],programmat:[16,17,20],progress:[6,12,16,17,20],project:[2,3,6,8,9,14,15,17,18,20],project_or_fold:[5,9,16],project_or_folder_id:[5,9,16],project_set:8,projectnam:18,projectset:[2,16],projid:3,prompt:[3,4,8,17],propag:9,proper:[12,16,17,18],properli:[8,17,18],properti:[1,2,8,9,12,16,17,18,20],prototyp:16,proven:[1,2,15,17,20],provenance_cach:20,provenance_fil:18,provid:[2,5,7,8,9,14,16,17,18,20],proxi:[2,16,20],proxystorag:[2,16],proxyurl:[2,16],pseudonym:[6,16],publicli:18,pull:[12,17],pure:8,purg:17,purpos:4,push:[3,16,20],put:[2,8,16,17,20],puturi:16,py:[0,9,16,17,20],py_instal:18,pycrypto:19,pypi:[16,17,18],pysftp:[16,19],pytest:17,python3:[2,4,16,17],python:[1,2,3,4,5,9,11,17],q1:[6,16],q:[3,17],qualiti:17,queri:[2,12,14,16,17,18,20],query_limit_and_offset:12,query_result:[14,16],queryabl:18,queryresult:18,querystr:[3,18],question:[6,16],queue:[2,6,16,17],quick:17,quickli:9,quit:9,quiz:17,quot:[2,3,16,17],quotecharact:[2,9,16],quux:3,qux1:9,qux2:9,qwerti:[2,16,17],r3:12,r:[0,3,9,16,17],race:17,rais:[2,16,17,20],ran:20,random:[11,12,18],rang:[9,16,17],rank:[14,18],rate:[1,12,17],rather:[2,8,16,17],raw:[0,16],raw_data:11,rawconfigpars:[2,16],rc:17,rdata:[0,16],re:[3,5,8,9,16],read:[2,5,8,9,12,16,17,18],read_csv:9,read_onli:[2,3,16],read_writ:[2,3,8,16],readabl:[5,9,12,16],readi:20,readlin:16,readm:[13,16,17,20],readmanifestfil:20,realli:[2,6,16],reason:[12,17],receiv:[2,16],recent:[2,3,9,11,16],recip:12,recogn:12,recogniz:17,recommend:[2,4,5,8,11,13,16,17],record:[1,2,3,8,15,16,20],recov:17,recoveri:17,recurs:[3,8,16,17,20],redirect:3,reduc:17,refer:[0,2,5,17],referenc:[12,20],reflect:[14,17,18],reformat:17,refresh:[2,16,17],regard:[2,10,16],regardless:18,region:17,regist:[2,3,10,16],reinstal:16,reject:[2,9,16],relat:[2,16,17,18],releas:13,release_not:[13,16],relev:17,reli:17,remain:[2,16,17],rememb:[3,17],rememberm:[2,3,4,16,17,18],remot:[12,17],remov:[2,3,5,9,12,16,17],remove_from_download_list:[2,16],remove_item:[16,17],removecolumn:9,renam:[5,9,17],render:16,reorder:20,repeatedli:[2,16],replac:[2,3,9,12,16,17,18,20],replace_with_your_keyring_password:[2,16],repo:[2,3,9,10,16,20],repoendpoint:[2,16],report:[13,16],repositori:[2,5,14,16,17,18],repositorynam:[5,16],repres:[0,1,2,5,6,9,10,12,15,16],represent:[0,10,16],reproduc:[16,20],request:[2,6,16,17],requester_pai:[2,16],requests_sess:[2,16],requir:[2,5,8,9,15,16,17,18,19,20],research:16,reserv:20,reset:17,resid:[17,20],resolv:17,resourc:[0,2,10,16,17],respect:17,respons:[2,12,16],rest:[2,3,6,9,16,17,20],restart:[7,12,17],restdelet:[2,16],restget:[2,16,18],restpost:[2,16],restput:[2,16],restrict:[2,8,16,17],result:[0,2,5,8,9,12,16,17,18,20],resultsa:[2,16,17],resum:[7,17],reticul:16,retri:[3,17,20],retriev:[2,3,6,7,8,14,16,17,18],retrypolici:[2,16],review:[2,16],revis:16,revoc:4,right:17,rna:11,robust:[7,17],rollin:9,rollinsbn1558:9,rollinsbn4001:9,root:[2,3,16,20],rough:8,row:[2,16,17,20],row_etag:9,row_id:[9,16,17,20],row_reference_set:9,row_vers:9,rowid:[9,16],rowidandversioninindex:[9,16],rowmetadatatupl:9,rowset:[2,16,17],rowsett:[9,16],rst:17,rule:[5,8],run:[2,3,7,8,16,17,19,20],rust:17,rzing:9,s3:[2,3,16,17],s3_client:8,s3_file_kei:[2,16],s3_kei:8,s:[0,1,2,3,4,5,7,8,9,10,12,14,15,16,17,18,19,20],safe:[12,20],sage:[0,14,16,18],sagebionetwork:[2,3,6,9,10,16,20],sai:[5,9,16],same:[0,3,8,11,12,16,17,18,20],sampl:[0,8,17,18],save:[4,11,17],scalar:12,scale:15,scan:17,scenario:8,schema:[2,14,16,17,18,20],schemabas:17,scheme:[10,16],scope:[4,5,8,9,14,16,17,18],score:[2,6,16,18],scratch:7,script:[16,17],search:[2,3,14,16,17,18],sec:12,second:[2,4,12,16,17,18],secret:[2,16],secret_access_kei:8,secretkei:[2,16],secretstorag:17,section:[4,8],secur:[4,8,17],see:[0,1,2,3,5,6,8,9,11,12,13,14,16,17,18,20],seed:12,seem:17,select:[2,3,9,10,12,14,16,17,18,20],selectcolumn:[9,16],self:[2,16],semi:20,send:[2,3,16],send_membership_invit:[2,16],sendmessag:[2,3,16,17,20],sent:[2,10,16,20],sep:18,separ:[0,2,5,8,9,12,16,17,18,20],seq:11,sequenc:12,seri:9,serial:[12,17],serious:[2,16],serv:[2,16],server:[2,9,16,17,19],servic:[2,8,12,16,17],servicetimeoutsecond:[2,16],session:[2,8,16,17,18],session_token:8,sessiontoken:[2,16],set:[0,1,2,4,5,8,9,10,16,17,20],set_annot:[1,2,16,17,18],set_entity_typ:[9,16,17,18],setannot:[2,14,16,17],setcolumnhead:9,setendpoint:[2,16],setpermiss:[2,6,16,17,18],setproven:[2,3,11,16,20],setstorageloc:[2,16],setting_typ:[2,16],settl:9,setup:[2,16],sever:[2,16,17],sftp:[2,16,17],sh:[2,16],share:[4,7,16,17],shared_executor:7,shell:[2,3,4,8,16,20],shortcut:[0,17],should:[2,3,5,7,9,10,16,17,19,20],shouldn:17,show:[2,5,12,16,17,18],shown:[2,16],side:7,sign:[2,16,17],silenc:17,silent:[2,3,16,17],similar:[8,9,14,17,18],simpl:16,simple_t:[9,16],simpli:[4,14],simplifi:17,sinc:[2,10,11,12,16,18,20],singl:[2,3,8,12,16,17],single_thread:17,site:[16,17],situat:[1,5,8],size:[2,9,16,17],skip:[2,3,16,20],skip_check:[2,16],skipcopyannot:[3,20],skipcopywiki:3,skipcopywikipag:20,slash:12,slow:8,small:[16,17],smallish:[2,16],snake_cas:12,snapshot:[2,16,17,20],so:[2,3,5,8,9,16,20],solut:8,some:[0,2,5,8,9,12,14,16,17,18],someon:12,someth:9,sonni:9,soon:[2,16],sort:[2,12,16],sortbi:[2,16],sortdirect:[2,16],sourc:[2,3,5,6,12,16,17,20],source_storage_location_id:[3,8,20],space:[3,8,12,17,20],special:[8,9],specif:[2,3,5,16,17,18,20],specifi:[0,2,3,4,5,8,12,15,16,17,18,20],speed:17,spell:17,sphinx:17,spinner:12,split:16,sporad:17,spot:17,sprintf:18,spuriou:17,sql:[2,3,9,16,17],sqlite:[8,20],ss:18,ssh:[2,16],ssh_except:17,sshexcept:17,st:[2,16,17],stabil:17,stabl:[3,16],stack:[17,20],stage:[2,16,17],staging_endpoint:[2,16],stai:16,standard:[16,17,18],start:[2,4,8,9,12,16,17,18],state:[16,18,20],statement:[9,16,17],statist:[17,20],statu:[2,16,17,18,20],stderr:17,stdout:[3,17],step:[0,8,9,11,16,19,20],stick:[6,16],still:17,stop:[2,16],storag:[2,3,9,16,17,20],storage_loc:8,storage_location_id:[2,7,8,16],storage_typ:[2,16],storageloc:[2,16],storagelocationid:[8,17],storagelocationset:[2,16],store:[2,4,5,6,7,8,9,11,14,15,16,17,18,20],str:[1,2,7,16,20],straight:19,straightforward:9,strand:[9,18],string:[0,2,3,5,7,9,12,14,16,17,18,20],stringio:[9,16],strip:[12,20],structur:[8,16,17,20],sts_enabl:[2,8,16],stuff:[15,18],style:[12,16,17],sub:[2,15,16,17],subclass:[5,9,12,16],subcommand:17,subfold:[2,8,16,20],subject:[2,16,20],submiss:[2,3,16,17,18],submissionannot:[6,16],submissionattach:20,submissioninstructionsmessag:[6,16,18],submissionreceiptmessag:[6,16,18],submissionstatu:[2,6,16,18],submissionstatusenum:[6,16],submissionview:[2,16,17,20],submissionviewschema:[2,16,17],submit:[2,6,16,17,18],submitt:[2,16],submitteralia:[2,3,6,16],subpag:[2,16,20],subpageid:[2,16,20],subpars:3,subsequ:[8,20],substanti:17,substitut:4,subtre:3,subwiki:20,sudo:[2,16,19],suffici:8,suffix:[9,16],suitabl:[9,16],summari:[10,16,17,20],suppli:[13,16],support:[2,3,4,5,8,9,14,16,17,18],supportssubfold:[2,16],suppress:[2,3,16,17,20],sure:[11,12,17],surnam:[10,16],sy:[17,18],syanpser:18,syn000000:9,syn000:[16,17],syn100009:[0,16],syn111:[16,17],syn1223:20,syn12312:[2,16],syn123450:20,syn123456:[0,11,15,16],syn12345:[0,2,6,12,16,17,20],syn12346:0,syn1234:[0,9,18,20],syn1235:[0,18,20],syn123:[1,2,3,4,5,8,9,16,17,20],syn12433:20,syn1243:20,syn124:20,syn1824434:15,syn1899498:16,syn1906479:[2,16],syn1906480:[2,16],syn1917825:[2,16],syn2222:[11,16,17],syn222:16,syn2290704:[6,16],syn23456:[0,16],syn2345:20,syn3260973:11,syn333:16,syn33455:20,syn3345:20,syn34234:17,syn345678:20,syn45678:20,syn4567:[0,18],syn456:[2,16,17],syn4988808:17,syn56789:11,syn789:[16,17],syn888:8,syn999:8,syn:[0,2,4,5,6,7,8,9,11,14,15,16,17,18,20],synanps:[2,16],synap:[2,16],synaps:[0,1,5,6,8,9,10,11,12,14,15,17,20],synapse_auth_token:[2,4,16,17],synapse_id:6,synapse_is_great:17,synapse_metadata_manifest:20,synapse_sts_s3_loc:8,synapsecach:[17,20],synapsecli:[0,1,2,4,5,6,7,9,10,11,12,13,14,15,16,17,19,20],synapseconfig:[2,3,8,16,17],synapseid:15,synapsemd5mismatcherror:17,synapsepassword:3,synapsepythoncli:[0,16],synapseshinyapp:18,synapsestor:[2,5,16,20],synapseunmetaccessrestrict:17,synapseus:3,synapseutil:[2,3,5,8,16,17,20],sync:[16,17],syncfromsynaps:[17,20],synchron:[3,18,20],synctosynaps:[3,17,20],syndccutil:17,synget:[17,18],syngetannot:14,synid:[2,5,16,17,18,20],synlogin:18,synonym:[2,16],synpi:17,synstor:18,syntax:[2,16,17],synu:17,system:[1,2,3,5,12,16,17],t:[2,3,5,11,16,17,18,20],tab:[16,20],tabl:[2,12,14,17,20],table_query_timeout:[2,16],tableabstractbaseclass:[9,16],tableent:[9,16,20],tableexampl:3,tableid:[9,16,18],tablequeri:[2,9,14,16,17,18,20],tablequeryresult:[9,16],tableview:[16,17],tabular:9,tag:[2,10,16,17],take:[1,2,4,5,9,12,16,17,18],taken:[2,5,16,18],target:[0,2,3,5,16,20],target_dir:12,targetid:[0,5,16],targetvers:[0,5,16],targetversionnumb:[0,16],team:[2,3,6,16,17],teamattach:20,teamid:[2,10,16],teammemb:[2,10,16,17],teammembershipstatu:[2,16],teamnam:[2,3,16],techniqu:[9,18],tempfil:18,templat:17,temporari:12,term:[0,2,16],termin:[12,17],test:[0,2,12,14,16,17,18],test_cach:17,test_command_get_recursive_and_queri:17,test_ent:[2,16],test_get_with_downloadlocation_and_ifcollis:17,test_threaded_access:17,text:[0,2,7,16,20],than:[2,8,15,16,17],thank:18,thei:[1,5,8,9,12,16,17,18],them:[4,8,9,10,15,16,17],themselv:[5,8,17],thi:[0,1,2,3,4,5,6,7,8,9,10,11,12,15,16,17,18,19,20],thing:[5,17],thoma:18,those:[2,9,16,17],though:5,thought:[2,16],thousand:20,thread:[3,7,12,17,20],threadsafe_gener:12,threadsafe_it:12,three:[2,3,5,16,20],through:[7,8,16,17,20],throughput:17,thrown:17,thu:5,thumb:8,time:[2,5,8,9,10,11,12,16,17,18],timeout:[2,16,17],timestamp:[9,17],titl:[2,10,15,16,18,20],tmp:8,to_file_handle_id:20,to_list:12,to_loc:20,to_unix_epoch_tim:12,to_unix_epoch_time_sec:12,tobetransf:12,togeth:[2,14,16],token:[2,4,8,16,17],tool:[1,8,16,17,18,19],top:16,topolgical_sort:12,topolog:12,total:[2,12,16,20],totalcal:20,totalnumberofresult:17,touch:12,traceback:[3,20],track:[11,15,16],tradit:8,train:9,transcriptionfactor:[9,18],transfer:[12,17],transform:[12,16],transit:17,translat:[16,18],travers:20,travi:17,treat:[5,16],tree:[3,16],tri:[0,12,16],trigger:[7,8],tripl:12,truncat:[16,17],tsv:[3,17,20],tupl:[2,9,12,16],turn:[16,17],two:[0,2,5,8,9,12,16,17],txt:[2,4,5,11,12,14,16,18,20],type:[0,2,3,5,9,10,12,14,16,17,18,20],type_list:17,typic:[2,5,8,16],typo:17,tyu:[2,3,16],u:[3,17],ubuntu:[2,16,19],ugli:17,unambigu:5,unauthor:20,unavail:[2,16],unchang:[16,20],uncom:4,under:[2,4,5,16,17,20],underli:[3,8,17,20],understand:8,undesir:8,unfortun:[5,12],unicodeencodingerror:17,uniform:[10,16],uninform:17,union:[1,2,16],uniqu:[2,5,6,8,10,12,16,18,20],unique_filenam:12,unit:[0,17],unit_test_cli:0,unix:[9,12,17,18],unless:[2,8,16,20],unlik:18,unlock:[2,16],unmet:17,unpars:17,unsaf:[2,16,17],unstabl:17,unsuccessfulli:17,untouch:20,unus:[2,16],up:[0,2,8,12,16,17,18],updat:[2,3,6,8,9,10,12,17,18,20],update_markdown:16,updateact:[2,16],updated_fil:11,updateent:17,updateexist:[3,20],updatelink:20,updatesynid:20,upgrad:[3,13,16,17],upload:[2,3,5,8,9,12,16,17,20],upload_fil:8,upload_request:7,uploaddestin:7,uploadfil:17,uploadfilehandl:[2,9,16,17],uploadsynapsemanagedfilehandl:17,upon:[2,6,16],uri:[1,2,10,16],url1:12,url2:12,url:[0,2,3,5,10,12,16,17,20],urlencod:18,urllib3:17,urllib:17,urlretriev:17,us:[0,1,2,3,5,6,9,10,11,12,16,17,20],usabl:17,usag:[2,8,16,17],use_boto_st:8,use_boto_sts_transf:8,usedent:[0,16,17],usedurl:[0,16,17],user:[1,2,3,4,5,6,7,8,9,10,12,16,17,18,20],user_id:[6,17],usergrouphead:[10,16],userid:[2,9,16],userid_list:17,usernam:[2,3,4,10,16,17,18],userprofil:[10,16],userprofileattach:20,usual:[2,5,6,9,16],utc:9,utf:[5,16],util:[8,17,20],uuid:[2,16],uw:[14,18],v1:[16,17],v2:17,v:[3,14,18],valid:[2,3,8,9,12,16,17,20],valu:[1,2,3,5,9,12,16,17,18,20],valueerror:[17,20],variabl:[2,5,9,16,17],varieti:8,variou:[17,18],vcf:17,ve:[0,15,17],verifi:20,verificationsubmiss:20,verify_exist:12,version:[2,3,5,6,8,9,12,15,16,17,18,20],version_check:[13,16],version_url:[13,16],versioncom:[11,17],versionlabel:[2,16],versionnumb:[2,6,9,16,17],verson:20,vi:[14,18],via:[2,3,6,8,16,17,20],view:[2,4,9,16,17,20],view_ent:17,view_tabl:17,view_typ:17,viewbas:17,viewtyp:17,viewtypemask:17,vignett:17,virtual:[5,16,18],visibl:17,visit:14,vitualenv:[2,16],voidspac:19,vol:9,volum:8,vuner:17,w3c:[0,16],wa:[0,2,3,8,16,17,20],wai:[1,4,5,6,8,12,14,16,17,20],wait:[2,16],walk:[2,16,17],walk_funct:20,walkedpath:20,want:[8,9,17,18,20],warn:[2,12,16,17],warn_if_inherit:[2,16],wasexecut:[0,16],washington:18,we:[0,1,2,3,4,5,8,9,11,14,15,16,17,18],weather:20,web:[3,11,15,16,18],websit:[2,3,16],weight:12,weird:17,welcom:[2,16],well:[2,16,17,20],were:[2,12,16,18,20],what:[9,16,20],wheel:17,when:[0,1,2,3,4,5,8,9,10,12,16,17,18,20],whenev:20,where:[2,3,5,7,8,9,12,16,17,18,20],wherea:[1,5,8],whether:[2,3,5,10,12,16,17,20],which:[0,1,2,3,4,5,6,7,8,9,10,12,15,16,17,18,20],white:20,whitespac:12,whizzi:[0,18],who:4,whose:[2,3,5,8,12,16,17,20],wiki2:[2,16],wiki:[2,3,17,20],wikiattach:20,win:[0,16],window:[2,12,16,17],wish:[8,16],with_progress_bar:20,within:[2,3,5,7,8,9,14,16,17,18],without:[2,3,4,8,9,10,16,17,18,20],wonki:17,work:[2,6,9,11,14,16,17,19],workaround:18,workflow:[4,17],would:[4,8,17,20],wrap:[2,3,9,16,17,18,20],wrapper:[2,16],write:[2,4,8,12,16,17,18],writechar:18,written:[12,20],wrong:[6,17],www:20,x:[2,14,16,17,18,20],xxx:17,xyx:20,xyz:[0,1,2,5,9,16,18],y:[8,18],ye:4,year:[9,17],yeild:20,yield:20,you:[0,2,4,5,8,9,11,16,17,18,19,20],your:[2,5,8,9,14,16,17,18,19],yyyi:18,zap:[9,18],zing1:9,zing2:9,zing3:9,zip:12,zip_entry_nam:12,zip_fil:12,zipfil:12,zipfilepath:12},titles:["Provenance","Annotations","Synapse Client","Synapse command line client","Manage Synapse Credentials","Entity","Evaluations","Synapse Multipart Upload","S3 Storage Features","Tables","Teams","File Upload","Utility Functions","Version Functions","Views","Wiki","Synapse Python Client Documentation","Release Notes","Using synapseclient with R through reticulate","Using the Synapse Python Client with SFTP data storage","Overview"],titleterms:{"0":[16,17],"01":17,"02":17,"03":17,"04":17,"05":17,"06":17,"07":17,"08":17,"09":17,"1":17,"10":17,"11":17,"12":17,"13":17,"15":17,"16":17,"17":17,"18":17,"19":17,"2":17,"20":17,"2016":17,"2017":17,"2018":17,"2019":17,"2020":17,"2021":17,"2022":17,"2023":17,"23":17,"28":17,"29":17,"3":[16,17],"31":17,"4":17,"5":17,"6":17,"7":17,"8":17,"9":17,"class":[1,15],"function":[12,13],"import":[0,16],"new":[11,17],One:4,access:[16,18],activ:0,add:3,an:[0,8],annot:[1,3,5,11,14,16,18],api:16,app:18,argument:3,articl:16,associ:3,attach:9,automat:8,awscli:8,boto3:8,bug:17,cat:3,chang:[5,9,11],client:[2,3,16,19],column:9,command:[3,8],config:3,connect:16,content:18,control:16,copi:20,cp:3,creat:[0,3,8,14,15],credenti:[4,8,18],data:[0,1,9,16,18,19],delet:[3,9],describ:20,detail:[1,5],directli:16,dockerrepositori:5,document:16,download:[3,11],embed:15,enabl:8,encod:3,entiti:[0,5,16,18],environ:4,evalu:[6,16,18],extern:8,featur:[8,17],file:[5,9,11],fix:17,folder:[5,8],from:[8,18],get:[3,16],help:3,highlight:17,imag:15,implement:[1,5],improv:17,inform:[2,16],instal:[3,16,18,19],let:4,level:9,line:[3,8],link:5,list:3,locat:8,login:[2,3,4],major:16,manag:4,manifest:3,method:[9,15],migrat:[3,8,20],modul:9,monitor:20,more:[2,16],multipart:7,mv:3,name:[3,5],next:16,note:[16,17],object:0,onweb:3,oper:4,organ:16,overview:[16,20],panda:9,posit:3,programmat:8,project:[5,16],properti:5,proven:[0,3,11,16,18],python:[8,16,18,19],queri:[3,9],r:18,record:0,refer:16,releas:[16,17],reticul:18,row:9,rowset:9,s3:8,schema:[5,9],set:[3,11],sftp:19,share:18,shini:18,show:3,sourc:[0,1],specif:11,st:[3,8],statu:6,storag:[8,19],store:[0,3],stori:17,structur:9,sub:3,submiss:6,submit:3,synaps:[2,3,4,7,16,18,19],synapsecli:[8,18],synapseconfig:4,sync:[3,20],system:4,tabl:[3,5,9,16,18],task:17,team:10,test:3,through:18,time:4,token:3,transfer:8,unix:19,updat:[11,14,15,16],upload:[7,11],us:[4,8,14,18,19],usag:[3,18],util:[12,16],variabl:4,variant:19,version:[11,13],view:[5,14,18],walk:20,what:17,whole:9,wiki:[15,16,18],window:19,without:11,your:4}}) \ No newline at end of file