Essential guidelines for computational method benchmarking

inferCNV

https://github.com/broadinstitute/inferCNV/wiki

HoneyBADGER

https://jef.works/HoneyBADGER/Getting_Started.html https://github.com/JEFworks-Lab/HoneyBADGER

CopyKAT

https://github.com/navinlabcode/copykat

CaSpER

https://rpubs.com/akdes/673120

https://github.com/akdess/CaSpER

other methods

chisel

https://github.com/raphael-group/chisel

Alleloscope

https://github.com/seasoncloud/Alleloscope

CONET

https://www.biorxiv.org/content/10.1101/2021.04.23.441204v1.full

https://github.com/tc360950/CONET