diff --git a/HelpPage.d b/HelpPage.d
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-HelpPage.o: HelpPage.cpp HelpPage.h version.h
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diff --git a/Likelihood.d b/Likelihood.d
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@@ -1,16 +0,0 @@
-Likelihood.o: Likelihood.cpp Likelihood.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_defs.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_log.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kstring.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kroundup.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/sam.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_endian.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kstring.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/faidx.h \
- profile.h bfgs.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/bgzf.h \
- briggs_writer.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/thread_pool.h \
- read_all_reads.h misc.h Recalibration.h ngsBriggs.h PosteriorProb.h
diff --git a/Likelihood.o b/Likelihood.o
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diff --git a/PosteriorProb.d b/PosteriorProb.d
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+++ /dev/null
@@ -1,16 +0,0 @@
-PosteriorProb.o: PosteriorProb.cpp PosteriorProb.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_defs.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_log.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kstring.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kroundup.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/sam.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_endian.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kstring.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/faidx.h \
- profile.h bfgs.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/bgzf.h \
- briggs_writer.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/thread_pool.h \
- read_all_reads.h misc.h Recalibration.h ngsBriggs.h Likelihood.h
diff --git a/PosteriorProb.o b/PosteriorProb.o
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diff --git a/Recalibration.d b/Recalibration.d
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@@ -1,16 +0,0 @@
-Recalibration.o: Recalibration.cpp \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_defs.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_log.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kstring.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kroundup.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/sam.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_endian.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kstring.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/faidx.h \
- profile.h bfgs.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/bgzf.h \
- briggs_writer.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/thread_pool.h \
- read_all_reads.h misc.h Likelihood.h ngsBriggs.h
diff --git a/Recalibration.o b/Recalibration.o
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diff --git a/bfgs.d b/bfgs.d
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-bfgs.o: bfgs.cpp bfgs.h
diff --git a/bfgs.o b/bfgs.o
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diff --git a/briggs_writer.d b/briggs_writer.d
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--- a/briggs_writer.d
+++ /dev/null
@@ -1,12 +0,0 @@
-briggs_writer.o: briggs_writer.cpp \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_defs.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_log.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kstring.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kroundup.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/sam.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_endian.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/thread_pool.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kstring.h \
- briggs_writer.h
diff --git a/briggs_writer.o b/briggs_writer.o
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diff --git a/misc.d b/misc.d
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index 7faf281..0000000
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+++ /dev/null
@@ -1,16 +0,0 @@
-misc.o: misc.cpp \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_defs.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_log.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kstring.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kroundup.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/sam.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_endian.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kstring.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/faidx.h \
- profile.h bfgs.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/bgzf.h \
- briggs_writer.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/thread_pool.h \
- read_all_reads.h misc.h ngsBriggs.h
diff --git a/misc.o b/misc.o
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diff --git a/ngsBriggs.d b/ngsBriggs.d
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index 19dbab1..0000000
--- a/ngsBriggs.d
+++ /dev/null
@@ -1,17 +0,0 @@
-ngsBriggs.o: ngsBriggs.cpp \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_defs.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_log.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kstring.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kroundup.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/sam.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_endian.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kstring.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/faidx.h \
- profile.h bfgs.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/bgzf.h \
- briggs_writer.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/thread_pool.h \
- read_all_reads.h misc.h Recalibration.h Likelihood.h PosteriorProb.h \
- ngsBriggs_cli.h HelpPage.h ngsBriggs.h
diff --git a/ngsBriggs.o b/ngsBriggs.o
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diff --git a/ngsBriggs_cli.d b/ngsBriggs_cli.d
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index 6a52f7f..0000000
--- a/ngsBriggs_cli.d
+++ /dev/null
@@ -1,13 +0,0 @@
-ngsBriggs_cli.o: ngsBriggs_cli.cpp \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_defs.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_log.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kstring.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kroundup.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/sam.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_endian.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kstring.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/faidx.h misc.h \
- Recalibration.h Likelihood.h PosteriorProb.h ngsBriggs_cli.h HelpPage.h \
- ngsBriggs.h
diff --git a/ngsBriggs_cli.o b/ngsBriggs_cli.o
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diff --git a/profile.d b/profile.d
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--- a/profile.d
+++ /dev/null
@@ -1,12 +0,0 @@
-profile.o: profile.cpp \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/sam.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_defs.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_log.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kstring.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kroundup.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_endian.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/bgzf.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kstring.h \
- profile.h
diff --git a/profile.o b/profile.o
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diff --git a/read_all_reads.d b/read_all_reads.d
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index a6521d6..0000000
--- a/read_all_reads.d
+++ /dev/null
@@ -1,10 +0,0 @@
-read_all_reads.o: read_all_reads.cpp \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/bgzf.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_defs.h \
- read_all_reads.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/sam.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_log.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kstring.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/kroundup.h \
- /maps/projects/korneliussen/people/wql443/htslib/htslib/hts_endian.h
diff --git a/read_all_reads.o b/read_all_reads.o
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