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Continous Integration Tests#129

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singjc merged 30 commits intoPyProphet:masterPyProphet/pyprophet:masterfrom Roestlab:ciRoestlab/pyprophet:ciCopy head branch name to clipboardNov 29, 2024

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Commits on Oct 30, 2024

• add continous integration

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• preinstall numpy

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• remove numpy from setup

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• install numpy in setup script

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• convert to .toml setup

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• remove numpy from requirement

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• just ubuntu for now

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• fix setup.py and .toml

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• add line to build extension

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Commits on Oct 31, 2024

• Merge branch 'master' into ci

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• fix: stats tests

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• add pytest-regtest to workflow

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Commits on Nov 1, 2024

• update autotunning so does not fail

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• fix: fix level context tests

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• update export-parquet tests and fix tests

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Commits on Nov 20, 2024

• raise error if standard deviation computed is 0

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Commits on Nov 21, 2024

• test: set tree method as exact for tests

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• update snapshot tests

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• update actions to dependent on reuiqrements file

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• add dependabot

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• add tests for windows and mac

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• remove default_rng

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• remove mac tests

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• remove copy of np arrays

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• remove windows tests

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• refactor: new function for normlaizing score to decoys

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• replace semi-supervised learning normalization with sklearn

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• revert to numpy std

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• minor updates to pyprophet.toml

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Commits on Nov 27, 2024

• fix: ValueError: Buffer dtype mismatch, expected 'DATA_TYPE' but got 'double'

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