Trim reads by default

Public-Health-Bioinformatics · Oct 31, 2019 · 9e290cf · 9e290cf
1 parent 2ffb61f
commit 9e290cf
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/main/resources/workflows/0.1.0/irida_workflow.xml b/src/main/resources/workflows/0.1.0/irida_workflow.xml
@@ -15,7 +15,7 @@
     <parameter name="shovill-1-adv.mincov" defaultValue="2">
       <toolParameter toolId="toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.0.4" parameterName="adv.mincov" label="Minimum contig coverage" type="integer"/>
     </parameter>
-    <parameter name="shovill-1-trim" defaultValue="false">
+    <parameter name="shovill-1-trim" defaultValue="true">
       <toolParameter toolId="toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.0.4" parameterName="trim" label="Trim reads" type="boolean"/>
     </parameter>
     <parameter name="shovill-1-adv.namefmt" defaultValue="contig%05d">