build: pinning numpy under 2.0 for some tools

Author: nishaq503

clustering/k-means-clustering-tool/pyproject.toml

@@ -17,6 +17,7 @@ typer = "^0.7.0"
 nyxus = "^0.5.0"
 vaex = "^4.7.0"
 scikit_learn="^1.0.2"
+numpy = "<2.0.0"
 
 [tool.poetry.group.dev.dependencies]
 bump2version = "^1.0.1"

features/feature-segmentation-eval-tool/pyproject.toml

@@ -18,6 +18,7 @@ pandas = "^1.2.4"
 scipy = "^1.6.2"
 typer = "^0.7.0"
 vaex = "^4.7.0"
+numpy = "<2.0.0"
 
 [tool.poetry.group.dev.dependencies]
 bump2version = "^1.0.1"

formats/tabular-converter-tool/pyproject.toml

@@ -18,6 +18,7 @@ pyarrow = "^11.0.0"
 blake3 = "^0.3.3"
 fcsparser = "^0.2.4"
 vaex = "^4.7.0"
+numpy = "<2.0.0"
 
 
 [tool.poetry.group.dev.dependencies]

utils/rxiv-download-tool/pyproject.toml

@@ -18,14 +18,9 @@ rxiv-types = "^0.1.0"
 tqdm = "^4.66.1"
 xmltodict = "^0.13.0"
 pydantic = "1.10.4"
+numpy = "<2.0.0"
 
 
-[[tool.poetry.source]]
-name = "test"
-url = "https://test.pypi.org/simple/"
-default = false
-secondary = true
-
 [tool.poetry.group.dev.dependencies]
 bump2version = "^1.0.1"
 flake8 = "^6.0.0"