From f9dd62e6728b54ffdc850bd8be6951bac704d006 Mon Sep 17 00:00:00 2001 From: Vasu Jaganath Date: Mon, 13 Jan 2025 12:20:19 -0500 Subject: [PATCH] fix the name of sophios parent directory in subdir path --- workflows/bbbc.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflows/bbbc.py b/workflows/bbbc.py index de03ccd..44138f1 100644 --- a/workflows/bbbc.py +++ b/workflows/bbbc.py @@ -8,7 +8,7 @@ def workflow() -> Workflow: bbbcdownload.name = 'BBBC001' bbbcdownload.outDir = Path('bbbcdownload.outDir') - subdirectory = Step(clt_path='../workflow-inference-compiler/cwl_adapters/subdirectory.cwl') + subdirectory = Step(clt_path='../sophios/cwl_adapters/subdirectory.cwl') subdirectory.directory = bbbcdownload.outDir subdirectory.glob_pattern = 'bbbcdownload.outDir/BBBC/BBBC001/raw/Images/human_ht29_colon_cancer_1_images/'