Commit 4066b98 1 parent 017ab55 commit 4066b98 Copy full SHA for 4066b98
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lines changed Original file line number Diff line number Diff line change @@ -35,19 +35,20 @@ def workflow() -> Workflow:
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image_assembler .imgPath = omeconverter .outDir
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image_assembler .outDir = Path ('image_assembler.outDir' )
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- precompute_slide = Step (clt_path = '../image-workflows/cwl_adapters/precompute_slide.cwl' )
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- precompute_slide .inpDir = image_assembler .outDir
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- precompute_slide .pyramidType = 'Zarr'
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- precompute_slide .imageType = 'image'
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- precompute_slide .outDir = Path ('precompute_slide.outDir' )
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+ # precompute_slide = Step(clt_path='../image-workflows/cwl_adapters/precompute_slide.cwl')
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+ # precompute_slide.inpDir = image_assembler.outDir
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+ # precompute_slide.pyramidType = 'Zarr'
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+ # precompute_slide.imageType = 'image'
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+ # precompute_slide.outDir = Path('precompute_slide.outDir')
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steps = [bbbcdownload ,
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subdirectory ,
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filerenaming ,
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omeconverter ,
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montage ,
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image_assembler ,
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- precompute_slide ]
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+ # precompute_slide
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+ ]
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filename = 'bbbc_py' # .yml
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viz = Workflow (steps , filename )
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return viz
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