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disable precompute_slide
1 parent 017ab55 commit 4066b98

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workflows/bbbc.py

+7-6
Original file line numberDiff line numberDiff line change
@@ -35,19 +35,20 @@ def workflow() -> Workflow:
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image_assembler.imgPath = omeconverter.outDir
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image_assembler.outDir = Path('image_assembler.outDir')
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precompute_slide = Step(clt_path='../image-workflows/cwl_adapters/precompute_slide.cwl')
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precompute_slide.inpDir = image_assembler.outDir
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precompute_slide.pyramidType = 'Zarr'
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precompute_slide.imageType = 'image'
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precompute_slide.outDir = Path('precompute_slide.outDir')
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# precompute_slide = Step(clt_path='../image-workflows/cwl_adapters/precompute_slide.cwl')
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# precompute_slide.inpDir = image_assembler.outDir
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# precompute_slide.pyramidType = 'Zarr'
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# precompute_slide.imageType = 'image'
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# precompute_slide.outDir = Path('precompute_slide.outDir')
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steps = [bbbcdownload,
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subdirectory,
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filerenaming,
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omeconverter,
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montage,
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image_assembler,
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precompute_slide]
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# precompute_slide
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]
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filename = 'bbbc_py' # .yml
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viz = Workflow(steps, filename)
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return viz

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