initial release bety helm chart

.github/workflows/release.yaml

@@ -0,0 +1,62 @@
+name: Release Charts
+
+on:
+  push:
+    branches:
+      - main
+
+jobs:
+  release:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v2
+        with:
+          fetch-depth: 0
+
+      - name: Get dependencies
+        run: |
+          helm repo add bitnami https://charts.bitnami.com/bitnami
+          helm repo add ncsa https://opensource.ncsa.illinois.edu/charts/
+          helm dep build
+
+      - name: get release info
+        id: release_info
+        run: |
+          version="$(awk '/^version:/ { print $2} ' Chart.yaml)"
+          changelog="$(sed -e "1,/^### ${version}/d" -e "/^###/,\$d" -e '/^$/d' README.md)"
+          changelog="${changelog//'%'/'%25'}"
+          changelog="${changelog//$'\n'/'%0A'}"
+          changelog="${changelog//$'\r'/'%0D'}"
+          echo "::set-output name=version::$version"
+          echo "::set-output name=changelog::$changelog"
+
+      - name: Publish to NCSA OpenSource
+        uses: bsord/helm-push@v3
+        with:
+          username: ${{ secrets.HELM_USERNAME }}
+          password: ${{ secrets.HELM_PASSWORD }}
+          repository-url: "https://opensource.ncsa.illinois.edu/charts"
+          chart-folder: "."
+          force: true
+
+      - name: create release
+        uses: actions/create-release@v1
+        id: create_release
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        with:
+          tag_name: ${{ steps.release_info.outputs.version }}
+          release_name: Release ${{ steps.release_info.outputs.version }}
+          body: ${{ steps.release_info.outputs.changelog }}
+
+      - name: Upload Release Asset
+        id: upload-release-asset 
+        uses: actions/upload-release-asset@v1
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        with:
+          upload_url: ${{ steps.create_release.outputs.upload_url }}
+          asset_path: ./clowder-${{ steps.release_info.outputs.version }}.tgz
+          asset_name: clowder-${{ steps.release_info.outputs.version }}.tgz
+          asset_content_type: application/zip

.gitignore

@@ -0,0 +1,17 @@
+# development
+.idea
+
+# generated helm charts folder
+charts
+
+# helm package
+.cr-release-packages
+bety-*.tgz
+
+# custom values
+secrets-*.yaml
+values-*.yaml
+*.values.yaml
+
+# database dumps
+*.sql

.helmignore

@@ -0,0 +1,24 @@
+# Patterns to ignore when building packages.
+# This supports shell glob matching, relative path matching, and
+# negation (prefixed with !). Only one pattern per line.
+.DS_Store
+# Common VCS dirs
+.git/
+.gitignore
+.bzr/
+.bzrignore
+.hg/
+.hgignore
+.svn/
+# Common backup files
+*.swp
+*.bak
+*.tmp
+*~
+# Various IDEs
+.project
+.idea/
+*.tmproj
+.vscode/
+*.sql
+values-*.yaml

Chart.lock

@@ -0,0 +1,6 @@
+dependencies:
+- name: postgresql
+  repository: https://charts.bitnami.com/bitnami
+  version: 8.9.9
+digest: sha256:788b9c691c8d3254deb1ee2341c41b4ab6a50f5112b839896daa9aa2d7bf457d
+generated: "2021-10-06T23:08:24.431682-05:00"

Chart.yaml

@@ -0,0 +1,44 @@
+apiVersion: v2
+type: application
+
+# Information about chart.
+name: betydb
+icon: https://isda.ncsa.illinois.edu/~kooper/charts/images/betydb.png
+home: https://www.betydb.org
+description: >
+  Web-interface to the Biofuel Ecophysiological Traits and Yields Database 
+  (used by PEcAn and TERRA REF)
+
+# This is the chart version. This version number should be incremented each time you make changes
+# to the chart and its templates, including the app version.
+# Versions are expected to follow Semantic Versioning (https://semver.org/)
+version: 0.5.0
+
+# This is the version number of the application being deployed. This version number should be
+# incremented each time you make changes to the application. Versions are not expected to
+# follow Semantic Versioning. They should reflect the version the application is using.
+appVersion: "5.4.1"
+
+# List of people that maintain this helm chart.
+maintainers:
+  - name: Rob Kooper
+    email: kooper@illinois.edu
+
+# location of source code
+sources:
+  - https://github.com/pecanproject/bety
+
+# Dependencies for chart. Some of the dependencies are only installed if they
+# are enabled.
+dependencies:
+- name: postgresql
+  version: ~8.9
+  repository: https://charts.bitnami.com/bitnami
+  condition: postgres.enabled
+
+annotations:
+  artifacthub.io/links: |
+    - name: Helm Chart
+      url: https://github.com/pecanproject/bety-helm
+  artifacthub.io/changes: |
+    - initial release of bety helm chart

README.md

@@ -0,0 +1,26 @@
+THIS IS A PLACEHOLDER
+
+## Upgrading BETY
+
+If the password is generated you will need to save this secret before you upgrade. You can do this using the following commands. **If you do not do this, you will not be able to retrieve the previous secrets**.
+
+```
+BETY_PASSWORD=$(kubectl get secrets betydb -o json | jq -r '.data.betyPassword' | base64 -d)
+BETY_SECRETKEY=$(kubectl get secrets betydb -o json | jq -r '.data.secretKey' | base64 -d)
+POSTGRESQL_PASSWORD=$(kubectl get secrets betydb-postgresql -o json | jq -r '.data."postgresql-password"' | base64 -d)
+```
+
+now you can upgrade and use the secrets retrieved.
+
+```
+helm upgrade betydb ncsa/betydb \
+    --set betyPassword="${BETY_PASSWORD}" \
+    --set secretKey="${BETY_SECRETKEY}" \
+    --set postgresql.postgresqlPassword="${POSTGRESQL_PASSWORD}"
+```
+
+## ChangeLog
+
+### 0.5.0
+- initial release of the BETY helm chart.
+- build on bety 5.4.1

cr.yaml

@@ -0,0 +1,2 @@
+#sign: true
+#key: Chart Releaser Test Key

ct.yaml

@@ -0,0 +1,11 @@
+# See https://github.com/helm/chart-testing#configuration
+remote: origin
+target-branch: main
+chart-dirs:
+  - .
+chart-repos:
+  - bitnami=https://charts.bitnami.com/bitnami
+  - ncsa=https://opensource.ncsa.illinois.edu/charts/
+helm-extra-args: --timeout 600s
+validate-yaml: true
+check-version-increment: true

templates/NOTES.txt

@@ -0,0 +1,33 @@
+Get the application URL by running these commands:
+{{- if .Values.ingress.enabled }}
+{{- range .Values.ingress.hosts }}
+  http{{ if $.Values.ingress.tls }}s{{ end }}://{{ . }}{{ $.Values.ingress.path }}
+{{- end }}
+{{- else if contains "NodePort" .Values.service.type }}
+  export NODE_PORT=$(kubectl get --namespace {{ .Release.Namespace }} -o jsonpath="{.spec.ports[0].nodePort}" services {{ include "betydb.fullname" . }})
+  export NODE_IP=$(kubectl get nodes --namespace {{ .Release.Namespace }} -o jsonpath="{.items[0].status.addresses[0].address}")
+  echo http://$NODE_IP:$NODE_PORT
+{{- else if contains "LoadBalancer" .Values.service.type }}
+     NOTE: It may take a few minutes for the LoadBalancer IP to be available.
+           You can watch the status of by running 'kubectl get --namespace {{ .Release.Namespace }} svc -w {{ include "betydb.fullname" . }}'
+  export SERVICE_IP=$(kubectl get svc --namespace {{ .Release.Namespace }} {{ include "betydb.fullname" . }} -o jsonpath='{.status.loadBalancer.ingress[0].ip}')
+  echo http://$SERVICE_IP:{{ .Values.service.port }}
+{{- else if contains "ClusterIP" .Values.service.type }}
+  kubectl port-forward service/{{ include "betydb.fullname" . }} 8080:{{ .Values.service.port }}
+  echo "Visit http://127.0.0.1:8080 to use your application"
+{{- end }}
+
+{{- if .Values.users }}
+
+Following users have been created:
+{{- range $index, $element := .Values.users }}
+  - {{ .username }} : {{ .fullname }} <{{ .email }}>
+{{- end }}
+{{- end }}
+
+To upgrade please make sure to save the passwords for BETY, postgresql and the secret key for BETY.
+
+BETY_PASSWORD=$(kubectl get secrets betydb -o json | jq -r '.data.betyPassword' | base64 -d)
+BETY_SECRETKEY=$(kubectl get secrets betydb -o json | jq -r '.data.secretKey' | base64 -d)
+POSTGRESQL_PASSWORD=$(kubectl get secrets betydb-postgresql -o json | jq -r '.data."postgresql-password"' | base64 -d)
+

templates/_helpers.tpl

@@ -0,0 +1,108 @@
+{{/* vim: set filetype=mustache: */}}
+{{/*
+Expand the name of the chart.
+*/}}
+{{- define "betydb.name" -}}
+{{- default .Chart.Name .Values.nameOverride | trunc 63 | trimSuffix "-" -}}
+{{- end -}}
+
+{{/*
+Create a default fully qualified app name.
+We truncate at 63 chars because some Kubernetes name fields are limited to this (by the DNS naming spec).
+If release name contains chart name it will be used as a full name.
+*/}}
+{{- define "betydb.fullname" -}}
+{{- if .Values.fullnameOverride -}}
+{{- .Values.fullnameOverride | trunc 63 | trimSuffix "-" -}}
+{{- else -}}
+{{- $name := default .Chart.Name .Values.nameOverride -}}
+{{- if contains $name .Release.Name -}}
+{{- .Release.Name | trunc 63 | trimSuffix "-" -}}
+{{- else -}}
+{{- printf "%s-%s" .Release.Name $name | trunc 63 | trimSuffix "-" -}}
+{{- end -}}
+{{- end -}}
+{{- end -}}
+
+{{/*
+Create chart name and version as used by the chart label.
+*/}}
+{{- define "betydb.chart" -}}
+{{- printf "%s-%s" .Chart.Name .Chart.Version | replace "+" "_" | trunc 63 | trimSuffix "-" -}}
+{{- end -}}
+
+{{/*
+Common labels
+*/}}
+{{- define "betydb.labels" -}}
+app.kubernetes.io/name: {{ include "betydb.name" . }}
+helm.sh/chart: {{ include "betydb.chart" . }}
+app.kubernetes.io/instance: {{ .Release.Name }}
+{{- if .Chart.AppVersion }}
+app.kubernetes.io/version: {{ .Chart.AppVersion | quote }}
+{{- end }}
+app.kubernetes.io/managed-by: {{ .Release.Service }}
+{{- end -}}
+
+{{/*
+postgresql Host
+*/}}
+{{- define "betydb.postgresqlHost" -}}
+{{- if .Values.postgresql.enabled -}}
+{{ .Release.Name }}-postgresql
+{{- else -}}
+{{ .Values.postgresql.postgresqlHost }}
+{{- end -}}
+{{- end -}}
+
+{{/*
+postgresql Port
+*/}}
+{{- define "betydb.postgresqlPort" -}}
+{{- if .Values.postgresql.service -}}
+{{ .Values.postgresql.service.port }}
+{{- else -}}
+{{ .Values.postgresql.postgresqlPort | default "5432" }}
+{{- end -}}
+{{- end -}}
+
+{{/*
+Environment variables for PostgreSQL
+*/}}
+{{- define "betydb.postgresqlEnv" -}}
+- name: PGHOST
+  value: {{ include "betydb.postgresqlHost" . | quote }}
+- name: PGPORT
+  value: {{ include "betydb.postgresqlPort" . | quote }}
+- name: PGUSER
+  value: {{ .Values.postgresql.postgresqlUsername | default "postgres" | quote }}
+- name: PGPASSWORD
+  valueFrom:
+    secretKeyRef:
+{{- if .Values.postgresql.enabled }}
+      name: {{ .Release.Name }}-postgresql
+      key: postgresql-password
+{{- else }}
+      name: {{ include "betydb.fullname" . }}
+      key: postgresqlPassword
+{{- end }}
+{{- end }}
+
+{{/*
+Environment variables for BetyDB
+*/}}
+{{- define "betydb.betydbEnv" -}}
+- name: BETYUSER
+  value: {{ .Values.betyUser | quote }}
+- name: BETYPASSWORD
+  valueFrom:
+    secretKeyRef:
+      name: {{ include "betydb.fullname" . }}
+      key: betyPassword
+- name: BETYDATABASE
+  value: {{ .Values.betyDatabase | quote }}
+- name: LOCAL_SERVER
+  value: {{ .Values.localServer | quote }}
+- name: REMOTE_SERVERS
+  value: {{ .Values.remoteServers | quote }}
+{{- end }}

templates/configmap.yaml

@@ -0,0 +1,27 @@
+{{- if .Values.customization }}
+apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: {{ include "betydb.fullname" . }}-application
+  labels:
+    {{ include "betydb.labels" . | nindent 4 }}
+data:
+  {{- if .Values.customization.application }}
+  application.yml: |
+    {{- .Values.customization.application | nindent 4}}
+  {{- end }}
+---
+{{- if .Values.customization }}
+apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: {{ include "betydb.fullname" . }}-logos
+  labels:
+    {{ include "betydb.labels" . | nindent 4 }}
+binaryData:
+  {{- range $key, $val := .Values.customization.logos }}
+  {{ $key }}: |
+    {{- $val | nindent 4 }}
+  {{- end }}
+{{- end }}
+{{- end }}