Addressed compatibility issue of OpenPNM with numpy 2.2

[hpc-dave]

With NumPy 2.2, the reshape function signature has changed:
https://numpy.org/doc/stable/reference/generated/numpy.reshape.html
The provided array is now a positional-only argument and the newshape parameter is deprecated in favor of shape.

This affected the following files:

• openpnm/_skygraph/queries/_funcs.py
• openpnm/io/_pergeos.py

Fix:
Scanned the whole repository for affected calls, found and fixed following occurrences

• removed the explicit assignment of temp to a in the reshape call in openpnm/_skygraph/queries/_funcs.py line 167
• removed the newshape parameter and use positional arguments for compatibility of numpy versions in openpnm/_skygraph/queries/_funcs.py line 167 and openpnm/io/_pergeos.py line 178

Note:

• pytest is currently failing due to updates in scipy 1.15,*, see discussions here and here

[codecov]

Codecov Report

Attention: Patch coverage is 50.00000% with 1 line in your changes missing coverage. Please review.

Project coverage is 89.7%. Comparing base (18d004e) to head (cd0fc13).
Report is 8 commits behind head on dev.

Additional details and impacted files

@@          Coverage Diff          @@
##             dev   #2958   +/-   ##
=====================================
  Coverage   89.7%   89.7%           
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  Files        148     148           
  Lines       8662    8662           
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  Hits        7774    7774           
  Misses       888     888