This repository is home to the code behind the free, open-access, online training materials for the Population Health Disparities Geocoding Project (PHDGP) 2.0 workshop on analyzing geo-referenced health outcomes data.
This project is currently under development.
Once you open this project in RStudio or open an R console in this project's top level directory, run the following:
# if you haven't already installed these dependencies
install.packages("bookdown")
install.packages("here")
install.package("ggdist")
devtools::install_github("clauswilke/colorblindr")
install.packages("downlit") # for the bs4_theme
install.packages("mapview") # used for interactive maps
remotes::install_github("rstudio/bslib") # for the bs4_theme
bookdown::render_book('.')The bookdown code adopts the paradigm of not running code that doesn't have to
be run to minimize compilation time. That means that many of the code chunks
shown are shown with the eval=FALSE chunk option set and their outputs
written to a static file (such as .png or .rds files) and shown using
knitr::include_graphics or loaded with readRDS in hidden (echo = FALSE)
code chunks that are evaluated.
The result is a website rendered in the _book/ directory which you can open in
a web browser. The training materials open with the frontmatter at
_book/index.html.
In the images/ and data/ there are directories for each of the chapters to
store image or data files that are needed to render figures and tables in each
of the chapters.