From db0c408053051cfcfd6d1566f8a05cde54e4f65a Mon Sep 17 00:00:00 2001 From: "Paul J. Durack" Date: Tue, 2 Jul 2024 13:42:27 -0700 Subject: [PATCH] update input4MIPs_CVs.json --- CVs/input4MIPs_CV.json | 6974 +++++++++++++++++++++++++++-------- src/registerSource_id.ipynb | 185 +- 2 files changed, 5548 insertions(+), 1611 deletions(-) diff --git a/CVs/input4MIPs_CV.json b/CVs/input4MIPs_CV.json index 6c0bc89b..4c5eabc9 100644 --- a/CVs/input4MIPs_CV.json +++ b/CVs/input4MIPs_CV.json @@ -2,9 +2,9 @@ "CV":{ "DRS":{ "directory_path_example":"input4MIPs/CMIP6Plus/CMIP/PCMDI/PCMDI-AMIP-1-1-9/ocean/mon/tos/gn/v20230512/", - "directory_path_template":"////////", + "directory_path_template":"/////////", "filename_example":"tos_input4MIPs_SSTsAndSeaIce_CMIP_PCMDI-AMIP-1-1-9_gn_187001-202212.nc", - "filename_template":"[_].nc" + "filename_template":"_____[_].nc" }, "activity_id":{ "input4MIPs":{ @@ -28,6 +28,8 @@ "institution_id":[ "CCCma", "CNRM-Cerfacs", + "CR", + "DRES", "IACETH", "IAMC", "ImperialCollege", @@ -98,3500 +100,7553 @@ ], "source_id":{ "ACCESS1-3-rcp85-1-0":{ - "_timestamp":"2021-04-22T19:05:37.327Z", + "_status":"Published", "contact":"ISMIP6 Steering Team (ismip6@gmail.com)", - 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Project" + }, + "Prototype":{ + "long_name":"MIP identity to capture all prototype datasets collected for uncertainty exploration - not for CMIP production use" } } }, diff --git a/src/registerSource_id.ipynb b/src/registerSource_id.ipynb index f2be7b84..98300d4a 100644 --- a/src/registerSource_id.ipynb +++ b/src/registerSource_id.ipynb @@ -18,7 +18,8 @@ "PJD 2 Jul 2024 - Add missing \"license\" in stdDict\n", "PJD 2 Jul 2024 - Add missing \"region\" in stdDict\n", "PJD 2 Jul 2024 - Add missing \"title\" in stdDict\n", - "PJD 2 Jul 2024 - Validated all stdKeys and esgfKeys exist for all entries" + "PJD 2 Jul 2024 - Validated all stdKeys and esgfKeys exist for all entries\n", + "PJD 2 Jul 2024 - Added sync repo changes - input4MIPs_CVs.json" ] }, { @@ -96,8 +97,8 @@ "name": "stdout", "output_type": "stream", "text": [ - "CPU times: user 38.3 ms, sys: 15 ms, total: 53.3 ms\n", - "Wall time: 59.4 ms\n" + "CPU times: user 34.4 ms, sys: 16.4 ms, total: 50.9 ms\n", + "Wall time: 67.8 ms\n" ] } ], @@ -120,7 +121,7 @@ }, { "cell_type": "code", - "execution_count": 135, + "execution_count": 2, "id": "776826bd-f567-44e5-ac7c-aee5d38933ee", "metadata": { "jupyter": { @@ -317,18 +318,14 @@ "id": "df78753f-8f8b-490c-9719-7ebbe2ca2e7e", "metadata": {}, "source": [ - "## sync with repo - input4MIPs_source_id.json" + "## sync repo - input4MIPs_source_id.json" ] }, { "cell_type": "code", "execution_count": 153, "id": "b58189a2-5a81-488f-a206-d1318d168a1f", - "metadata": { - "jupyter": { - "source_hidden": true - } - }, + "metadata": {}, "outputs": [ { "name": "stdout", @@ -366,173 +363,55 @@ }, { "cell_type": "markdown", - "id": "a2136e8a-5b0f-4fdf-9d88-76640063e89d", + "id": "ab8fd6b5-19f9-4422-a6be-3877e2134ebd", "metadata": {}, "source": [ - "## validate all source_id's have entries" + "## sync repo changes - create composite CV - CVs/input4MIPs_CVs.json" ] }, { "cell_type": "code", - "execution_count": 157, - "id": "36564f5e-21ca-4224-98eb-97863cf993fa", - "metadata": {}, - "outputs": [], - "source": [ - "srcIdGithub = \"https://raw.githubusercontent.com/PCMDI/input4MIPs_CVs/main/input4MIPs_source_id.json\"\n", - "js = requests.get(srcIdGithub)\n", - "srcIds = json.loads(js.text)" - ] - }, - { - "cell_type": "code", - "execution_count": 167, - "id": "3bddbc1d-a3b9-4ad9-87c3-5284f8d896a0", - "metadata": { - "collapsed": true, - "jupyter": { - "outputs_hidden": true - } - }, - "outputs": [ - { - "data": { - "text/plain": [ - "dict_keys(['ACCESS1-3-rcp85-1-0', 'CCMI-hist-nat-1-0', 'CCMI-hist-nat-1-1', 'CCMI-hist-sol-1-0', 'CCMI-hist-sol-1-1', 'CCMI-hist-stratO3-1-0', 'CCMI-hist-volc-1-0', 'CCMI-hist-volc-1-1', 'CCMI-ssp245-nat-1-0', 'CCMI-ssp245-sol-1-0', 'CCMI-ssp245-stratO3-1-0', 'CCMI-ssp245-volc-1-0', 'CCSM4-rcp26-1-0', 'CCSM4-rcp85-1-0', 'CEDS-2016-06-18', 'CEDS-2016-06-18-sectorDimV2', 'CEDS-2016-06-18-supplemental-data', 'CEDS-2016-07-26', 'CEDS-2016-07-26-sectorDim', 'CEDS-2016-07-26-sectorDim-supplemental-data', 'CEDS-2017-05-18', 'CEDS-2017-05-18-supplemental-data', 'CEDS-2017-08-30', 'CEDS-2017-08-30-supplemental-data', 'CEDS-2017-10-05', 'CESM2-ssp585-1-0', 'CNRM-CM6-1-ssp126-1-0', 'CNRM-CM6-1-ssp585-1-0', 'CNRM-ESM2-1-ssp585-1-0', 'CR-CMIP-0-2-0', 'CSIRO-MK3-6-0-rcp85-1-0', 'DCPP-C-amv-1-1', 'DCPP-C-ipv-1-1', 'DRES-CMIP-BB4CMIP7-1-0', 'HadGEM2-ES-rcp85-1-0', 'IACETH-SAGE3lambda-2-1-0', 'IACETH-SAGE3lambda-3-0-0', 'IAMC-AIM-ssp370-1-0', 'IAMC-AIM-ssp370-1-1', 'IAMC-AIM-ssp370-1-1-supplemental-data', 'IAMC-AIM-ssp370-lowNTCF-1-1', 'IAMC-AIM-ssp370-lowNTCF-1-1-supplemental-data', 'IAMC-GCAM4-ssp434-1-0', 'IAMC-GCAM4-ssp434-1-1', 'IAMC-GCAM4-ssp434-1-1-supplemental-data', 'IAMC-GCAM4-ssp460-1-0', 'IAMC-GCAM4-ssp460-1-1', 'IAMC-GCAM4-ssp460-1-1-supplemental-data', 'IAMC-IMAGE-ssp119-1-0', 'IAMC-IMAGE-ssp119-1-1', 'IAMC-IMAGE-ssp119-1-1-supplemental-data', 'IAMC-IMAGE-ssp126-1-0', 'IAMC-IMAGE-ssp126-1-1', 'IAMC-IMAGE-ssp126-1-1-supplemental-data', 'IAMC-MESSAGE-GLOBIOM-ssp245-1-0', 'IAMC-MESSAGE-GLOBIOM-ssp245-1-1', 'IAMC-MESSAGE-GLOBIOM-ssp245-1-1-supplemental-data', 'IAMC-REMIND-MAGPIE-ssp534-over-1-0', 'IAMC-REMIND-MAGPIE-ssp534-over-1-1', 'IAMC-REMIND-MAGPIE-ssp534-over-1-1-supplemental-data', 'IAMC-REMIND-MAGPIE-ssp585-1-0', 'IAMC-REMIND-MAGPIE-ssp585-1-1', 'IAMC-REMIND-MAGPIE-ssp585-1-1-supplemental-data', 'IPSL-CM5A-MR-rcp26-1-0', 'IPSL-CM5A-MR-rcp85-1-0', 'ImperialCollege-1-0', 'ImperialCollege-1-1', 'ImperialCollege-2-0', 'ImperialCollege-AIM-ssp370-1-0', 'ImperialCollege-GLOBIOM-ssp245-1-0', 'ImperialCollege-IMAGE-ssp119-1-0', 'ImperialCollege-IMAGE-ssp126-1-0', 'ImperialCollege-REMIND-MAGPIE-ssp534os-1-0', 'ImperialCollege-REMIND-MAGPIE-ssp585-1-0', 'ImperialCollege-ssp245-covid-4-8-1', 'MIROC-ESM-CHEM-rcp26-1-0', 'MIROC-ESM-CHEM-rcp85-1-0', 'MIROC5-rcp26-1-0', 'MIROC5-rcp85-1-0', 'MOHC-HadISST-2-2-0-0-0', 'MOHC-highresSST-future-1-0-0', 'MOHC-highresSST-future-1-0-1', 'MPI-B-1pctNdep-1-0', 'MPI-M-MACv2-SP-1-0', 'MRI-JRA55-do-1-3', 'MRI-JRA55-do-1-3-2', 'MRI-JRA55-do-1-4-0', 'MRI-JRA55-do-1-5-0', 'MRI-JRA55-do-1-6-0', 'NCAR-CCMI-1-0', 'NCAR-CCMI-2-0', 'NCAR-CCMI-ssp119-1-0', 'NCAR-CCMI-ssp126-1-0', 'NCAR-CCMI-ssp126-2-0', 'NCAR-CCMI-ssp245-1-0', 'NCAR-CCMI-ssp245-2-0', 'NCAR-CCMI-ssp370-1-0', 'NCAR-CCMI-ssp370-2-0', 'NCAR-CCMI-ssp434-1-0', 'NCAR-CCMI-ssp460-1-0', 'NCAR-CCMI-ssp534os-1-0', 'NCAR-CCMI-ssp585-1-0', 'NCAR-CCMI-ssp585-2-0', 'NCAS-2-1-0', 'NorESM1-M-rcp26-1-0', 'NorESM1-M-rcp85-1-0', 'PCMDI-AMIP-1-1-0', 'PCMDI-AMIP-1-1-1', 'PCMDI-AMIP-1-1-2', 'PCMDI-AMIP-1-1-3', 'PCMDI-AMIP-1-1-4', 'PCMDI-AMIP-1-1-5', 'PCMDI-AMIP-1-1-6', 'PCMDI-AMIP-1-1-7', 'PCMDI-AMIP-1-1-8', 'PCMDI-AMIP-1-1-9', 'PCMDI-AMIP-ERSST5-1-0', 'PCMDI-AMIP-Had1p1-1-0', 'PCMDI-AMIP-OI2p1-1-0', 'SOLARIS-HEPPA-3-2', 'SOLARIS-HEPPA-CMIP-4-1', 'UCI-fu-prArctic-prAntarctic-1-0', 'UCI-fut2CAntarctic-1-0', 'UCI-fut2CArctic-1-0', 'UCI-fut2CArctic-2mAntarctic-1-0', 'UCI-fut2CBKSeas-1-0', 'UCI-fut2COkhotsk-1-0', 'UCI-pi-prArctic-prAntarctic-1-0', 'UCI-pi-prArctic-prAntarctic-1-1', 'UCI-piAntarctic-1-0', 'UCI-piArctic-1-0', 'UCI-preindustrial-1-0', 'UCI-present-1-0', 'UCI-present-197901-201412-Arctic-Antarctic-1-0', 'UCI-present-197901-201412-clim-Arctic-Antarctic-1-0', 'UCI-present-2mAntarctic-1-0', 'UColorado-RFMIP-0-4', 'UColorado-RFMIP-1-0', 'UColorado-RFMIP-1-1', 'UColorado-RFMIP-1-2', 'UKESM1-0-LL-ssp585-1-0', 'UReading-CCMI-1-0', 'UReading-CCMI-ssp119-1-0', 'UReading-CCMI-ssp119-1-1', 'UReading-CCMI-ssp126-1-0', 'UReading-CCMI-ssp245-1-0', 'UReading-CCMI-ssp370-1-0', 'UReading-CCMI-ssp434-1-0', 'UReading-CCMI-ssp434-1-1', 'UReading-CCMI-ssp460-1-0', 'UReading-CCMI-ssp460-1-1', 'UReading-CCMI-ssp534os-1-0', 'UReading-CCMI-ssp534os-1-1', 'UReading-CCMI-ssp585-1-0', 'UoM-AIM-ssp370-1-2-0', 'UoM-AIM-ssp370-1-2-1', 'UoM-AIM-ssp370-lowNTCF-1-2-0', 'UoM-AIM-ssp370-lowNTCF-1-2-1', 'UoM-CMIP-1-2-0', 'UoM-GCAM4-ssp434-1-2-0', 'UoM-GCAM4-ssp434-1-2-1', 'UoM-GCAM4-ssp460-1-2-0', 'UoM-GCAM4-ssp460-1-2-1', 'UoM-IMAGE-ssp119-1-2-0', 'UoM-IMAGE-ssp119-1-2-1', 'UoM-IMAGE-ssp126-1-2-0', 'UoM-IMAGE-ssp126-1-2-1', 'UoM-MESSAGE-GLOBIOM-ssp245-1-2-0', 'UoM-MESSAGE-GLOBIOM-ssp245-1-2-1', 'UoM-REMIND-MAGPIE-ssp534-over-1-2-0', 'UoM-REMIND-MAGPIE-ssp534-over-1-2-1', 'UoM-REMIND-MAGPIE-ssp585-1-2-0', 'UoM-REMIND-MAGPIE-ssp585-1-2-1', 'UoM-ssp126-1-1-0', 'UofMD-landState-2-1-h', 'UofMD-landState-AIM-ssp370-2-1-f', 'UofMD-landState-GCAM-ssp434-2-1-f', 'UofMD-landState-GCAM-ssp460-2-1-f', 'UofMD-landState-IMAGE-ssp119-2-1-f', 'UofMD-landState-IMAGE-ssp126-2-1-e', 'UofMD-landState-IMAGE-ssp126-2-1-f', 'UofMD-landState-MAGPIE-ssp534-2-1-e', 'UofMD-landState-MAGPIE-ssp534-2-1-f', 'UofMD-landState-MAGPIE-ssp585-2-1-e', 'UofMD-landState-MAGPIE-ssp585-2-1-f', 'UofMD-landState-MESSAGE-ssp245-2-1-f', 'UofMD-landState-high-2-1-h', 'UofMD-landState-low-2-1-h', 'VUA-CMIP-BB4CMIP6-1-0', 'VUA-CMIP-BB4CMIP6-1-1', 'VUA-CMIP-BB4CMIP6-1-2'])" - ] - }, - "execution_count": 167, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "srcIds[\"source_id\"].keys()" - ] - }, - { - "cell_type": "code", - "execution_count": 175, - "id": "3cb6e8cc-2adb-4bdd-bb3e-cf55b8a398e5", - "metadata": { - "jupyter": { - "source_hidden": true - } - }, - "outputs": [ - { - "data": { - "text/plain": [ - "[]" - ] - }, - "execution_count": 175, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "stdKeys = [\"_status\",\"contact\", \"dataset_category\", \"datetime_start\",\n", - " \"datetime_stop\", \"frequency\", \"further_info_url\",\n", - " \"grid_label\", \"institution_id\", \"license\", \"mip_era\",\n", - " \"nominal_resolution\", \"realm\", \"region\", \"source\",\n", - " \"source_id\", \"source_version\", \"target_mip\", \"title\"]\n", - "stdKeyList = list(srcIds[\"source_id\"][\"IAMC-IMAGE-ssp126-1-0\"].keys()) # PCMDI-AMIP-1-1-9\n", - "stdKeyList.remove(\"|dataProviderExtra\")\n", - "stdKeyList.remove(\"|dataProviderFile\")\n", - "stdKeyList.remove(\"|esgfIndex\")\n", - "stdKeyList\n", - "s = set(stdKeys)\n", - "diff = [x for x in stdKeyList if x not in s]\n", - "diff" - ] - }, - { - "cell_type": "code", - "execution_count": 5, - "id": "03865dab-389c-418a-abb4-9c764b0a179d", + "execution_count": 4, + "id": "a15d5295-2419-49fb-9857-d8f9ee23b3a6", "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "CPU times: user 72.1 ms, sys: 27.3 ms, total: 99.4 ms\n", - "Wall time: 114 ms\n" + "CPU times: user 18.9 ms, sys: 5.76 ms, total: 24.7 ms\n", + "Wall time: 24.6 ms\n" ] } ], "source": [ "%%time\n", - "# read input4mips_cvs source_id\n", - "# remote\n", - "srcIdGithub = \"https://raw.githubusercontent.com/PCMDI/input4MIPs_CVs/main/input4MIPs_source_id.json\"\n", - "js = requests.get(srcIdGithub)\n", - "srcIds = json.loads(js.text)\n", - "\n", - "# title missing: PCMDI new, CR, DRES\n", - "srcIds[\"source_id\"][\"CR-CMIP-0-2-0\"][\"title\"] = \"Climate Resource CMIP 0.2.0 dataset prepared for input4MIPs\"\n", - "srcIds[\"source_id\"][\"DRES-CMIP-BB4CMIP7-1-0\"][\"title\"] = \"Deltares CMIP BB4CMIP7 1.0 global fire emissions\"\n", - "srcIds[\"source_id\"][\"PCMDI-AMIP-ERSST5-1-0\"][\"title\"] = \"PCMDI-AMIP ERSST5 1.0 dataset prepared for input4MIPs\"\n", - "srcIds[\"source_id\"][\"PCMDI-AMIP-Had1p1-1-0\"][\"title\"] = \"PCMDI-AMIP Had-1.1 1.0 dataset prepared for input4MIPs\"\n", - "srcIds[\"source_id\"][\"PCMDI-AMIP-OI2p1-1-0\"][\"title\"] = \"PCMDI-AMIP OI-2.1 1.0 dataset prepared for input4MIPs\"\n", - "srcIds[\"source_id\"][\"SOLARIS-HEPPA-CMIP-4-1\"][\"title\"] = \"SOLARIS HEPPA CMIP 4.1 dataset prepared for input4MIPs\"\n", - "\n", - "# entries to check\n", - "stdKeys = [\"_status\",\"contact\", \"dataset_category\", \"datetime_start\",\n", - " \"datetime_stop\", \"frequency\", \"further_info_url\",\n", - " \"grid_label\", \"institution_id\", \"license\", \"mip_era\",\n", - " \"nominal_resolution\", \"realm\", \"region\", \"source\",\n", - " \"source_id\", \"source_version\", \"target_mip\", \"title\"]\n", - "esgfKeys = [\"_timestamp\", \"data_node\", \"latest\", \"replica\",\n", - " \"version\", \"xlink\"]\n", + "CVExportList = [\"activity_id\", \"dataset_category\", \"DRS\", \"institution_id\",\n", + " \"license\", \"mip_era\", \"product\", \"required_global_attributes\",\n", + " \"source_id\", \"target_mip\", \"tracking_id\"]\n", + "CVExportList.sort()\n", "\n", - "for cnt, srcId in enumerate(srcIds[\"source_id\"].keys()):\n", - " print(\"srcId:\", cnt, srcId)\n", - " srcId = srcIds[\"source_id\"][srcId]\n", - " print(srcId)\n", - " # check stdKeys\n", - " stdKeyList = list(srcId.keys())\n", - " stdKeyList.sort()\n", - " print(\"stdKeyList:\", stdKeyList)\n", - " s = set(stdKeys)\n", - " diff = [x for x in s if x not in stdKeyList]\n", - " if diff:\n", - " print()\n", - " print(\"diff:\", diff)\n", - " sys.exit()\n", - " #pdb.set_trace()\n", - " # check esgfKeys\n", - " esgfKeyList = list(srcId[\"|esgfIndex\"].keys())\n", - " esgfKeyList.sort()\n", - " print(\"esgfKeyList:\", esgfKeyList)\n", - " s = set(esgfKeys)\n", - " diff = [x for x in s if x not in esgfKeyList]\n", - " if diff:\n", - " print()\n", - " print(\"diff:\", diff)\n", - " sys.exit()\n", - " #pdb.set_trace() \n", - " print(\"catch\")\n", - " #pdb.set_trace()\n", - " clear_output(wait=False)\n", + "# Collate all CVs in master\n", + "tmp = {}\n", + "tmp[\"CV\"] = {}\n", + "for key in CVExportList:\n", + " fileName = \"\".join([\"input4MIPs_\", key, \".json\"])\n", + " filePath = os.path.join(\"..\", fileName)\n", + " #print(filePath)\n", + " with open(filePath,'r') as fH:\n", + " keyDict = json.load(fH)\n", + " tmp[\"CV\"][key] = keyDict[key]\n", "\n", - "# Write all out\n", - "oF = \"../input4MIPs_source_id.json\"\n", + "# Write collated CVs to file\n", + "if not os.path.exists(\"../CVs\"):\n", + " os.makedirs(\"../CVs\")\n", + "oF = \"../CVs/input4MIPs_CV.json\"\n", "if os.path.exists(oF):\n", " os.remove(oF)\n", "fH = open(oF, \"w\")\n", - "json.dump(srcIds, fH, ensure_ascii=True, sort_keys=True, indent=4, separators=(\",\", \":\"),)\n", + "json.dump(tmp, fH, ensure_ascii=True, sort_keys=True, indent=4, separators=(\",\", \":\"),)\n", "fH.close()" ] - }, - { - "cell_type": "code", - "execution_count": null, - "id": "59167a41-f2aa-4494-8d62-ec8333f1d47f", - "metadata": {}, - "outputs": [], - "source": [] } ], "metadata": {