diff --git a/workflow/envs/nanite.yaml b/workflow/envs/nanite.yaml index 5a6b031..3c7c036 100644 --- a/workflow/envs/nanite.yaml +++ b/workflow/envs/nanite.yaml @@ -4,29 +4,11 @@ channels: - bioconda - defaults - r - - mikeraiko dependencies: - nanofilt=2.8.0 - nanoplot=1.38.1 - minimap2=2.24 - krona=2.8.1 - # ViralFyle dependencies, please see the - # following link for more information: - # https://github.com/Dmitry-Antipov/viralFlye/blob/master/install.sh - - bcftools - - blast - - bwa - - freebayes - - minced - - prodigal - - python>=3.6 - - biopython - - numpy - - pysam - - scipy - - samtools - - seqtk - - tabix - - vcflib - - viralcomplete - - viralverify \ No newline at end of file + # ViralFyle dependencies + - viralflye + - flye \ No newline at end of file