Simplifying the conda deps for ViralFlye

OpenOmics · May 15, 2024 · e0f12f2 · e0f12f2
1 parent bbd361a
commit e0f12f2
Showing 1 changed file with 3 additions and 21 deletions.
diff --git a/workflow/envs/nanite.yaml b/workflow/envs/nanite.yaml
@@ -4,29 +4,11 @@ channels:
   - bioconda
   - defaults
   - r
-  - mikeraiko
 dependencies:
  - nanofilt=2.8.0
  - nanoplot=1.38.1
  - minimap2=2.24
  - krona=2.8.1
- # ViralFyle dependencies, please see the
- # following link for more information:
- # https://github.com/Dmitry-Antipov/viralFlye/blob/master/install.sh
- - bcftools
- - blast
- - bwa
- - freebayes
- - minced
- - prodigal
- - python>=3.6
- - biopython
- - numpy
- - pysam
- - scipy
- - samtools
- - seqtk
- - tabix
- - vcflib
- - viralcomplete
- - viralverify
+ # ViralFyle dependencies
+ - viralflye
+ - flye