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majority of bold records are being filtered #53

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johrstrom opened this issue Feb 24, 2022 · 0 comments

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johrstrom commented Feb 24, 2022

While working on #52 - I got this report. Apparently something like 82% of bold records are being marked as invalid.

- input_records: 585125
  invalid_records: 479287
  invalid_taxons: 494
  invalid_occurences: 0
  output_files: 105344
  name: add_bold_records
  time: '2022-02-23T16:59:10-05:00'

They're getting filtered here.

phylogatr-web/lib/tasks/pipeline.rake

Lines 317 to 321 in 2dcfb1d

    
           # TODO: every skipped record should be written to a file 
        
           unless record.gene_symbol_mapped.present? && record.sequence.present? && record.species.present? && record.species_binomial? 
        
             invalid_records += 1 
        
             next 
        
           end

johrstrom added the pipeline label

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