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gbif data filtered #27

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johrstrom opened this issue Nov 17, 2021 · 2 comments
Open

gbif data filtered #27

johrstrom opened this issue Nov 17, 2021 · 2 comments

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@johrstrom
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I'm linking gbif data, and the 1.7 TB file doesn't seem to be anything that gets through a regex for the id.

I see around there's filtered in the name of some files, but I don't know how they got filtered.
@johrstrom
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This file gets filtered down from 1.7 TB to 2.5 GB. Which means we only use about ~14% of gbif data.

2.5G /fs/project/PAS1604/gbif/0147211-200613084148143.filtered.txt

@johrstrom
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This is handled in this file (or some variation of the file as I'm about to rename it).

https://github.com/OSC/phylogatr-web/blob/40504e83491626da3a2279304c7464f6ce21df58/gbif_filter_occurrences.pbs

This ticket will now be to document this filtering.

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@johrstrom