.gitignore

# See https://help.github.com/articles/ignoring-files for more about ignoring files.
#
# If you find yourself ignoring temporary files generated by your text editor
# or operating system, you probably want to add a global ignore instead:
#   git config --global core.excludesfile '~/.gitignore_global'

# Ignore bundler config.
/.bundle

# Ignore the default SQLite database.
/db/*.sqlite3
/db/*.sqlite3-journal

# Ignore all logfiles and tempfiles.
/log/*
!/log/.keep
/tmp

# data to store simulations and file uploads for development
/data

# files used for deployment should not be versioned
/public/assets
/.env.local
/.env.production
/.env.development

# Do not version the dependencies
/vendor/bundle*

# hide bin dependencies
/bin/muscle*
/bin/trimal*
/bin/readal*
/bin/mafft*
/bin/einsi
/bin/fftns
/bin/fftnsi
/bin/ginsi
/bin/linsi
/bin/nwns
/bin/nwnsi
/mafft
bin/addsingle
bin/contrafoldwrap
bin/countlen
bin/disttbfast
bin/dndblast
bin/dndfast7
bin/dndpre
bin/dvtditr
bin/f2cl
bin/filter
bin/getlag
bin/hex2maffttext
bin/makedirectionlist
bin/mccaskillwrap
bin/multi2hat3s
bin/nodepair
bin/pairash
bin/pairlocalalign
bin/regtable2seq
bin/replaceu
bin/restoreu
bin/score
bin/seq2regtable
bin/seqkit
bin/setcore
bin/setdirection
bin/sextet5
bin/splittbfast
bin/tbfast
bin/version

# hide job output files
*.o[0-9][0-9][0-9][0-9]*


# ignore pyc files
*.pyc

# ignore slurm output files
*.out